aeeckhou/shallowHRD
This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).
R
Issues
- 4
Error in finding the 1st threshold
#22 opened by DolapoA - 7
Help to identify this error.
#15 opened by carolinehey - 1
- 1
shallowHRDv2
#20 opened by ToonRosseel - 2
cMAD question
#19 opened by carolinehey - 0
- 1
Why are some LGAs not registered
#17 opened by carolinehey - 3
Filename issues and continue on error
#16 opened by menzel - 2
- 2
Comment doesn't seem to match the code when merging small segments with larger ones
#12 opened by lbeltrame - 1
Logic error in merging segments
#13 opened by lbeltrame - 4
freezing after starting script
#11 opened by EtieM - 4
Why are most of the calculations done twice?
#10 opened by lbeltrame - 3
new version on hg38
#9 opened by laurie-tonon - 1
how to use it to detect genome homologous recombination in non-human resequsing data?
#8 opened by Yixiangzhang1996 - 1
different LGA results between versions
#7 opened by danyuewang - 1
Variable error in QDNA_from_bam_no_chrX.R
#6 opened by DucoG - 0
Frozen calculation of a sample
#5 opened by Fponelle - 1
Error or typo in the script
#4 opened by zhqingit - 6
- 4