aersoares81

aersoares81's Stars

• mermaid-js/mermaid

  Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown

  Language:TypeScript72.4k6373k6.6k

• typst/typst

  A new markup-based typesetting system that is powerful and easy to learn.

  Language:Rust35.1k942.7k936

• matplotlib/matplotlib

  matplotlib: plotting with Python

  Language:Python20.3k59210.6k7.7k

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python95535144175

• davidemms/OrthoFinder

  Phylogenetic orthology inference for comparative genomics

  Language:Python70627909188

• simonhmartin/genomics_general

  General tools for genomic analyses.

  Language:Python342912093

• BGI-shenzhen/PopLDdecay

  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

  Language:C++186132154

• popgenmethods/smcpp

  SMC++ infers population history from whole-genome sequence data.

  Language:C++1521325535

• ksamuk/pixy

  Software for painlessly estimating average nucleotide diversity within and between populations

  Language:Python119311414

• hahnlab/CAFE5

  Version 5 of the CAFE phylogenetics software

  Language:C++113713822

• ramachandran-lab/pong

  Fast analysis and visualization of latent clusters in population genetic data

  Language:Python6673211

• NBISweden/EMBLmyGFF3

  An efficient way to convert gff3 annotation files into EMBL format ready to submit.

  Language:Python59406815

• esrud/GONE

  GONE: Scripts, programs and an example data set

  Language:C423492

• alachins/sweed

  Likelihood-based Selective Sweep Detection

  Language:C353286

• ddarriba/prottest3

  Automatically exported from code.google.com/p/prottest3

  Language:Java34101515

• jeffersonfparil/compare_genomes

  A comparative genomics workflow using Nextflow, conda, Julia and R

  Language:Nextflow343217

• jkimlab/PAPipe

  29261

• sansubs/vcf2pop

  Language:HTML251411

• Tom-Jenkins/admixture_pie_chart_map_tutorial

  Tutorial for visualising admixture on a map

  Language:R23409

• EI-CoreBioinformatics/reat

  Robust Eukaryotic Annotation Toolkit

  Language:Python176253

• glipsnort/hmmIBD

  A hidden Markov model for detecting segments of shared ancestry (identity by descent)

  Language:C9228

• GuntherLab/READv2

  Language:Python9331

• bekirsch/HaploBlocks

  This repo contains HaploBlocks, an efficient tool for selection scans on popgen datasets.

  Language:C++7230

• PalamaraLab/HapNe

  Haplotype-based inference of recent effective population size in modern and ancient DNA samples

  Language:Python7362

• andrewparkermorgan/popcorn

  Language:R623

• capoony/PoolSNP

  Heuristic SNP caller for pooled sequencing data

  Language:Python6163

• marchoeppner/genomeannotator

  Language:Nextflow3201

• NBISweden/Training-Tech-shorts

  Short lessons, training various technologies useful to our work.

  Language:TeX3392311

• tvandervalk/AMBER

  Analyzing Mapping Biases and Evaluating Read Reliability

  Language:Python3

• TharinduTS/Calculating-and-plotting-PI

  1