aertslab/SCopeLoomR

Issues

• list.find

  #40 opened a year ago by xiaocong3333
  2

• Adding SCENIC AUC matrix is not working

  #39 opened 2 years ago by saeedfc
  0

• could not find function "get_cellAnnotation"

  #10 opened 5 years ago by yingyonghui
  7

• example for get_clusterings output format?

  #38 opened 2 years ago by dmsalsgh97
  0

• Error during loom export from SCENIC

  #37 opened 3 years ago by jeremycfd
  0

• add_embeddings error

  #36 opened 3 years ago by Jay-Leung
  0

• Adding new embedding can fail when new embedding has as id the total number of embeddings

  #32 opened 4 years ago by dweemx
  1

• add_seurat_clustering is not working

  #31 opened 4 years ago by saeedfc
  11

• Should be Seurat, not seurat in DESCRIPTION file.

  #35 opened 4 years ago by liqg
  0

• Link to a rendered version of the vignette & vignette version

  #34 opened 4 years ago by cflerin
  2

• problems converting a .csv file into loomfile, which can be manipulated with SCopeLoomR

  #30 opened 4 years ago by WinklerLaura
  25

• Getting clusterings with name fails when one clustering not present in global metadata

  #29 opened 4 years ago by dweemx
  0

• Row names are missing from the clustering data.frames of some .loom files

  #28 opened 4 years ago by dweemx
  0

• Inconsistency between get_ and add_ regulons (AUC)

  #27 opened 4 years ago by s-aibar
  1

• Missing "matrix" object in "w" mode

  #26 opened 4 years ago by dweemx
  0

• build_loom function error

  #25 opened 4 years ago by hzongyao
  1

• Installation issue

  #1 opened 4 years ago by KoichiHashikawa
  18

• How to convert the loom file to seurat object?

  #9 opened 4 years ago by Sophia409
  4

• Error adding scenic results

  #11 opened 4 years ago by hummuscience
  6

• Bug on getting the regulons when motif-based and track-based regulons are present in the loom

  #16 opened 4 years ago by dweemx
  0

• Error trying to open a loom file that is the output of pySCENIC

  #18 opened 4 years ago by gilhornung
  9

• Error in function "open_loom"

  #21 opened 4 years ago by Beyondvisible
  6

• why the SCopeLoomR showing not get_regulons function

  #23 opened 4 years ago by honghh2018
  4

• getMarkerGenes function

  #24 opened 4 years ago by cbravo93
  1

• What do superposition OR AND mean in SCope Compare part?

  #19 opened 4 years ago by sygongcode
  2

• Bug in conversion to loom v3

  #17 opened 4 years ago by cbravo93
  1

• add_seurat_clustering fails when clusters are not integers

  #15 opened 5 years ago by KatjaRM
  9

• loom v3

  #14 opened 5 years ago by cbravo93
  1

• Bug on cluster annotation from Seurat object

  #13 opened 5 years ago by cbravo93
  0

• Bug on add_seurat_clustering() for Seurat v3 objects

  #12 opened 5 years ago by cbravo93
  2

• How to get metadata?

  #8 opened 5 years ago by Sophia409
  3

• Metadata Display

  #4 opened 5 years ago by sedjro
  1

• Cannot add Seurat Embeddings

  #7 opened 6 years ago by saeedfc
  10

• How to send query loom files through gene names and not through Gene ID

  #6 opened 6 years ago by abhisheksinghnl
  1

• adding metadata to loom files

  #5 opened 6 years ago by abhisheksinghnl
  2

• Issue with building a .loom from a sparseMatrix (e.g.: dgCMatrix) stored in SingleCellExperiment objects

  #3 opened 6 years ago by abhisheksinghnl
  9

• Installation error

  #2 opened 6 years ago by abhisheksinghnl
  6