agrantSGI

agrantSGI's Stars

• Rdatatable/data.table

  R's data.table package extends data.frame:

  Language:R3.6k1764.5k991

• rich-iannone/DiagrammeR

  Graph and network visualization using tabular data in R

  Language:R1.7k68399247

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C79730701169

• hms-dbmi/UpSetR

  An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

  Language:R76638234158

• vcflib/vcflib

  C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

  Language:C++62940273221

• nextflow-io/awesome-nextflow

  A curated list of nextflow based pipelines

  57633289

• ewenme/ghibli

  Studio Ghibli colour palettes

  Language:R4237318

• Illumina/hap.py

  Haplotype VCF comparison tools

  Language:C++42341175125

• Boyle-Lab/Blacklist

  Application for making ENCODE Blacklists

  Language:C++27684139

• nf-core/tools

  Python package with helper tools for the nf-core community.

  Language:Python2451501.1k192

• aquaskyline/Clairvoyante

  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

  Language:Python171164127

• kipoi/models

  Model zoo for genomics

  Language:Python1662010760

• mfrasco/Metrics

  An R package for common supervised machine learning metrics.

  Language:R9952026

• Illumina/Pisces

  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.

  Language:C#96217316

• budach/pysster

  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks

  Language:Python8751022

• Przemol/seqplots

  :chart_with_upwards_trend:SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.

  Language:JavaScript8655625

• songw01/MEGENA

  Multiscale embedded gene co-expression network analysis

  Language:HTML4912416

• PhinchApp/Phinch

  Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, etc.). Features include support for HDF5 and JSON BIOM files, retooled visualizations, improved image export and sharing, and the ability to work offline.

  Language:JavaScript389149

• Rinoahu/SwiftOrtho

  A high performance tool to identify orthologs and paralogs across genomes.

  Language:Python2731511

• cmdcolin/mafviewer

  A JBrowse plugin to view multiple alignment format (MAF) files

  Language:JavaScript264254

• syntheticgenomics/sgidspace

  Language:Python2110110

• djreiss/cMonkey

  cMonkey integrated biclustering algorithm - official

  Language:R17226

• ernstlab/ConsHMM

  Language:Java16405

• tadKeys/tabsat

  Targeted Amplicon Bisulfite Sequencing Analysis Tool

  Language:Perl112163

• shujianbu/Phinch

  Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project represents an interdisciplinary collaboration between Pitch Interactive, a data visualization studio in Berkeley, CA, and biological researchers at UC Davis.

  Language:PHP10302

• zachcp/phylocanvas

  htmlwidgets for phylocanvas

  Language:R9352

• zachcp/phylogeo

  Mapping for Phyloseq

  Language:R84255

• bioboot/labsheet

  R package for generating Rmarkdown based hands-on HTML worksheets utilized in Barry's Bioinformatics classes at UCSD

  Language:R3200

• djaeg/Intronserter

  ChlamyIntronserter

  Language:Python21

• cran/msaR

  :exclamation: This is a read-only mirror of the CRAN R package repository. msaR — Multiple Sequence Alignment for R Shiny

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