nf-core/tools

Issues

• meta information not matching between main.nf and meta.yml should result in failure

  #3011 opened 10 days ago by mahesh-panchal
  0

• nf-core lint should not complain when label is double quoted, or fix quotation

  #3010 opened 10 days ago by mahesh-panchal
  0

• nf-core lint should say which conda packages are not specified correctly

  #3009 opened 10 days ago by mahesh-panchal
  0

• nf-core lint stack trace error list index out of range

  #3000 opened 15 days ago by mahesh-panchal
  1

• `nf-core modules create` issue for external modules repositories

  #2979 opened 11 days ago by nvnieuwk
  1

• can't create nf-core.yml file

  #3002 opened 11 days ago by paulsenlab
  4

• nf-core modules install <tool> throws a stack trace when first installing a module to a non-nf-core pipeline

  #2999 opened 15 days ago by mahesh-panchal
  0

• `nf-core subworkflows test` `--profile` flag doesn't like specifying `docker` or `conda`

  #2921 opened 2 months ago by jfy133
  2

• Add native support for multiple `org_path` in modules and subworkflows directories

  #2996 opened 17 days ago by AlexVCaron
  2

• Lean down CLI for remote component repositories

  #2993 opened 18 days ago by AlexVCaron
  3

• Add pipeline nf-test tests

  #2994 opened 18 days ago by mirpedrol
  0

• `nf-core sync` will modify the template incorrectly if the pipeline prefix is uppercase

  #2981 opened a month ago by human9
  2

• Improve error message when modules directory is not empty

  #2986 opened 25 days ago by matthdsm
  0

• Add nf-schema comment to the plugin import and sample sheet channel generation

  #2980 opened a month ago by ramirobarrantes
  1

• Add link to docs in warning about missing GitHub authentication token

  #2977 opened a month ago by asp8200
  0

• [create]: Make textual tests pass locally

  #2975 opened a month ago by mirpedrol
  0

• Pipeline CI dependant of the template version

  #2966 opened a month ago by mirpedrol
  0

• logo generation is inconsistent between github actions runners and local execution

  #2893 opened a month ago by jmuhlich
  1

• Update linting to support to changes introduced in `nf-schema`

  #2932 opened 2 months ago by nvnieuwk
  2

• [create]: Add button to open the created repo

  #2965 opened a month ago by mirpedrol
  0

• [create]: Show org + repo name that will be created

  #2964 opened a month ago by mirpedrol
  0

• [create]: different pipeline name validation for nf-core and custom pipelines

  #2963 opened a month ago by mirpedrol
  0

• Pipelines create: fetch list of user repos to push the pipeline

  #2962 opened a month ago by mirpedrol
  1

• Renaming job name in linting comment workflow

  #2924 opened 2 months ago by sgopalan98
  1

• nf-core should support private repos that are not on GitHub

  #2942 opened a month ago by stevekm
  2

• Using the nfcore/tools docker image gets permission denied now

  #2944 opened a month ago by thondeboer
  0

• Fix involucro for bioconductor-biocgenerics

  #2864 opened 3 months ago by pabloaledo
  1

• ToDo: Refactor SyncedRepo class and its subclasses ModulesRepo and WorkflowRepo

  #2940 opened a month ago by MatthiasZepper
  0

• Unhelpful error message in nf-core download when container registry is not defined or is wrong

  #2892 opened 3 months ago by remiolsen
  2

• Subworkflow installation bug

  #2928 opened 2 months ago by IreneRobles
  0

• Nf-core workflow version update

  #2926 opened 2 months ago by sgopalan98
  1

• Combining linting and linting-comment workflows

  #2925 opened 2 months ago by sgopalan98
  0

• Replace `check_max` with `resourceLimits`

  #2923 opened 2 months ago by ewels
  0

• nf-core download OperationalError: disk I/O error

  #2918 opened 2 months ago by bcardus
  1

• Add a suggestion to re-trigger nf-test when patching a modules

  #2910 opened 2 months ago by maxulysse
  0

• Broken link: schema_params

  #2907 opened 2 months ago by HomoPolyethylen
  1

• Print warning if an nf-core module no longer exists.

  #2905 opened 2 months ago by mahesh-panchal
  0

• Positional args warning is misleading

  #2901 opened 2 months ago by awgymer
  0

• Lint for `assertAll` in `main.nf.test` files

  #2900 opened 2 months ago by nvnieuwk
  0

• Add option for custom child-template repo

  #2898 opened 2 months ago by ewels
  1

• Schema lint: Handle exceptions for `TypeError`s

  #2896 opened 3 months ago by ewels
  0

• CI Tests are broken in 3.12

  #2890 opened 3 months ago by awgymer
  0

• Add the ability to skip version check for specified `include` elements.

  #2889 opened 3 months ago by TCLamnidis
  0

• Module test fails if tools are installed in a Python virtualenv inside the modules repository

  #2872 opened 3 months ago by emi80
  8

• Using `nf-core schema docs` truncates `help_text´

  #2865 opened 3 months ago by kedhammar
  3

• No informative error when missing param in manifest when nf-core schema build

  #2876 opened 3 months ago by toniher
  1

• `utils.determine_base_dir` is broken when nested configs exist

  #2862 opened 3 months ago by awgymer
  1

• Compile ucsc-bedgraphtobigwigh for ARM

  #2866 opened 3 months ago by pabloaledo
  0

• [FEATURE] add support for xz-compression

  #2860 opened 3 months ago by lrauschning
  0

• Use paths rather than config map for test data

  #2858 opened 3 months ago by adamrtalbot
  0