Issues
- 10
- 4
plotReducedDim hex
#209 opened by DarioS - 3
- 3
Box plot instead of violin plot
#207 opened by TuomasBorman - 3
Problem with deprecated argument in runPCA
#206 opened by lvkunz - 0
- 1
group_by for Faceting
#203 opened by DarioS - 7
fill_by for violin plots
#175 opened by alanocallaghan - 2
PlotGroupedHeatmap - column clustering
#195 opened by angkoomin - 4
- 1
runPCA Variance Explained not Recorded
#202 opened by DarioS - 3
Column names not showing up in plotGroupedHeatmap()
#200 opened by ycl6 - 2
Strange warning
#199 opened by RiboRings - 2
- 3
add a half violin function
#198 opened by shangguandong1996 - 4
Quantile cutoffs in UMAP plots
#197 opened by jfreimer - 4
partial match argument warning/error
#196 opened by LiNk-NY - 4
Use scattermore to speed up plotColData and plotReducedDim for large datasets
#191 opened by lambdamoses - 2
Gene names in nmf basis
#192 opened by liron27 - 1
ggbeeswarm dependency
#181 opened by alanocallaghan - 3
Adding alias to exprs_values argument
#186 opened by antagomir - 5
- 2
plotPCA not coloring points
#184 opened by lambdamoses - 1
plotGroupedHeatmap not colouring appropriately.
#176 opened by ellispatrick - 5
Option not to plot the points in violin plots
#174 opened by lambdamoses - 11
- 5
calculateQCMetrics() was depreciated. So how to obtain "is_feature_control" which automatically calcualted by calculateQCMetrics().
#145 opened by Anna-RNA88 - 0
Implement densvis options
#159 opened by alanocallaghan - 6
can plotUMAP offer a order parameter
#172 opened by shangguandong1996 - 4
Create rasters for plots involving many, many points
#173 opened by LTLA - 1
- 5
Add a `projectReducedDims` function
#168 opened by LTLA - 3
- 3
Use import or importFrom for `pheatmap`
#169 opened by ycl6 - 6
`plotDots` should document that `features=` can accept a factor to control the order
#166 opened by LTLA - 0
Pass to num_jobs for snifter
#165 opened by alanocallaghan - 5
label by ggrepel not centred in plotReducedDim
#162 opened by ycl6 - 3
Centering labels in plotReducedDim with force = 0
#164 opened by ycl6 - 1
- 4
remove destiny?
#157 opened by alanocallaghan - 0
Use RcppML for NMF
#160 opened by LTLA - 5
Error in validObject(.Object): grid is too coarse
#144 opened by mfansler - 0
Improve getVarianceExplained speed
#153 opened by LTLA - 7
Feature request: allow specification of row annotation colours in `plotHeatmap()`
#147 opened by PeteHaitch - 8
- 11
- 7
Repel labels in reduced dimensions plots
#152 opened by NadineBestard - 9
- 3
How to hide blank ID in plotHeatmap
#146 opened by Yale73 - 1
Call as.matrix prior to plotReducedDim
#143 opened by LTLA