alekseyzimin/masurca

Issues

• Not able to install MaSuRCA to ubuntu, getting this error

  #353 opened a month ago by ranjanmanishblue
  0

• Masurca 4.1.2 fails to compile by gcc-13

  #352 opened a month ago by lokapal
  0

• Refining alignments error

  #351 opened 2 months ago by gargkritika
  0

• Possible to restart a mega read pass that ends early on cluster

  #350 opened 3 months ago by CRL-CHAR
  0

• Running job on SLURM grid

  #349 opened 3 months ago by CRL-CHAR
  1

• Installation step fails at copying flye folder

  #348 opened 4 months ago by MatteoSchiavinato
  8

• Fails to build with `./install.sh: line 23: ...MaSuRCA-4.1.0/bin/masurca: No such file or directory`

  #323 opened 2 years ago by TheChymera
  2

• chromosome_scaffolder.sh: error: " Could not parse delta file"

  #347 opened 5 months ago by sowmiyakathir
  1

• Error correct PE

  #346 opened 6 months ago by OrsonMM
  0

• issues in installling the toolkit

  #345 opened 6 months ago by manaswini12356
  0

• Compilation error - Jellyfish

  #344 opened 7 months ago by malvaradol
  0

• Unable to locate the samba output

  #343 opened 8 months ago by Oieswarya
  0

• Hybrid Assembly - Failed with 'Segmentation fault'

  #342 opened 8 months ago by KasuniD
  0

• Polca fails at samtools sort step

  #341 opened 9 months ago by vidsvur
  0

• POLCA.sh fix for samtools current version

  #326 opened a year ago by hyphaltip
  1

• Empty final output

  #340 opened 10 months ago by desmodus1984
  0

• failed to unitig and segmentation fault

  #320 opened 2 years ago by evansbenj
  3

• Output directory for chromosome scaffolder tool

  #338 opened a year ago by dr-ashu-geno
  1

• Restarting job from last point

  #339 opened a year ago by Shaileshdesai76
  1

• POLCA fails to generate .vcf file

  #317 opened 2 years ago by lerminin
  3

• Does SAMBA list changes that were made to the assembly somewhere?

  #330 opened a year ago by MarkusRainerSchmidt
  2

• chromosome_scaffolder.sh: AUTO_REP_COV_THRESH=: syntax error: operand expected (error token is "=")

  #316 opened 2 years ago by Banthandor
  1

• Error correction of PE reads failed. Check pe.cor.log.

  #337 opened a year ago by mictadlo
  0

• invalid forward file for PE library

  #336 opened a year ago by mictadlo
  1

• Millions of .bam files created during POLCA

  #329 opened a year ago by drew-olson-tmru
  2

• mega-reads joining failed

  #335 opened a year ago by combrooks
  0

• Core Dump Error running masurca

  #334 opened a year ago by ankush290307
  0

• [little glitch] mummer issues

  #333 opened a year ago by robertpark1228
  0

• (MaSuRCA v4.1.0) polca.sh failed with SAMtools error "[bam_header_read] EOF marker is absent. The input is probably truncated."

  #332 opened a year ago by wanyuac
  0

• Do I need to trim raw illumina PE reads from adapters before assembling?

  #331 opened a year ago by carla-hazelf
  0

• Issue with Polca input

  #304 opened 2 years ago by asan-emirsaleh
  2

• Sequence 1 not found at MaSuRCA/4.0.9-foss-2021a-Perl-5.32.1/bin/output_reconciled_scaffolds.pl line 36, <STDIN> line 1.

  #328 opened a year ago by max-baer
  0

• Hybrid assembly using low quality HiFi reads.

  #327 opened a year ago by javibio-git
  0

• CA failed

  #325 opened 2 years ago by EglantineMB
  0

• Genome size assembled 50% shorter than expected

  #324 opened 2 years ago by frsepulveda
  0

• Chromosome scaffolder assembly options

  #322 opened 2 years ago by bioramg
  0

• Cannot locate the output file after running the Samba

  #321 opened 2 years ago by Oieswarya
  0

• Error reading - chmod: cannot access './run.sh'

  #319 opened 2 years ago by PrishaTiwari05
  0

• last release archive is empty?

  #310 opened 2 years ago by Krasnopeev
  4

• ERROR: Operating system limit of 1025 open files. The current -F setting

  #314 opened 2 years ago by WJT0925
  1

• Stuck at samtools/ Aligning reads step

  #318 opened 2 years ago by an22an
  0

• Long read input

  #315 opened 2 years ago by dromerog93
  0

• mega-reads exited before assembly

  #313 opened 2 years ago by DiegoSafian
  0

• Release 4.1.0 corrupted/wrong tar.gz file

  #311 opened 2 years ago by MmasterT
  3

• chromosome_scaffolder - turn off splitting - border-less-gap-filling

  #312 opened 2 years ago by kullrich
  3

• Error: jellyfish not found or failed to run

  #305 opened 2 years ago by kataksk
  1

• Assemblage short reads (Illumina) using MaSurca 4.0.8

  #309 opened 2 years ago by saidelhasnaoui
  0

• failing in command.sh file after calling variants

  #308 opened 2 years ago by an22an
  0

• Can't fork: Resource temporarily unavailable

  #307 opened 2 years ago by WJT0925
  1

• I would like to know whether the data in the original path can be deleted first after the CA/1-overlapper folder appears

  #306 opened 2 years ago by WJT0925
  0