amirfeizi

amirfeizi's Stars

• ollama/ollama

  Get up and running with Llama 3.3, Mistral, Gemma 2, and other large language models.

  Language:Go104k6055.3k8.3k

• langchain-ai/langchain

  🦜🔗 Build context-aware reasoning applications

  Language:Jupyter Notebook96.9k6948k15.8k

• dair-ai/Prompt-Engineering-Guide

  🐙 Guides, papers, lecture, notebooks and resources for prompt engineering

  Language:MDX51.3k5632075k

• run-llama/llama_index

  LlamaIndex is a data framework for your LLM applications

  Language:Python37.6k2495.7k5.4k

• microsoft/graphrag

  A modular graph-based Retrieval-Augmented Generation (RAG) system

  Language:Python21k1465682.1k

• williamfiset/Algorithms

  A collection of algorithms and data structures

  Language:Java17.5k4261784.4k

• artidoro/qlora

  QLoRA: Efficient Finetuning of Quantized LLMs

  Language:Jupyter Notebook10.1k85249826

• facebookresearch/hydra

  Hydra is a framework for elegantly configuring complex applications

  Language:Python8.9k1301.4k644

• docker/genai-stack

  Langchain + Docker + Neo4j + Ollama

  Language:Python4.2k6494925

• lancedb/lance

  Modern columnar data format for ML and LLMs implemented in Rust. Convert from parquet in 2 lines of code for 100x faster random access, vector index, and data versioning. Compatible with Pandas, DuckDB, Polars, Pyarrow, and PyTorch with more integrations coming..

  Language:Rust4.1k431.1k236

• pykeen/pykeen

  🤖 A Python library for learning and evaluating knowledge graph embeddings

  Language:Python1.7k27555191

• DeepGraphLearning/KnowledgeGraphEmbedding

  Language:Python1.3k2554267

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.3k261k366

• mitchelloharawild/vitae

  R Markdown Résumés and CVs

  Language:R1.2k25218239

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python959107175

• pchunduri6/rag-demystified

  An LLM-powered advanced RAG pipeline built from scratch

  Language:Python8136651

• titipata/pubmed_parser

  :clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

  Language:Python59721105169

• junxia97/awesome-pretrain-on-molecules

  [IJCAI 2023 survey track]A curated list of resources for chemical pre-trained models

  50219153

• MannLabs/CKG

  Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

  Language:Jupyter Notebook4542762102

• CompEpigen/figeno

  Tool for plotting sequencing data along genomic coordinates.

  Language:Python2526228

• Genentech/gReLU

  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

  Language:Python23594323

• Google-Health/records-research

  Language:Python219121566

• mahmoodlab/HEST

  HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

  Language:Python19144015

• gustaveroussy/sopa

  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

  Language:Python144711520

• datadotworld/cwd-benchmark-data

  Data for the Chat With Your Data benchmark.

  Language:Shell1279625

• stephenturner/biorecap

  Retrieve and summarize bioRxiv preprints with a local LLM using ollama

  Language:R63258

• tidyomics/tidyomics

  Easily install and load packages from the tidyomcis ecosystem

  Language:R635190

• atgu/ukbb_pan_ancestry

  Analyses conducting GWAS across the UKBB diverse superpopulations

  Language:Python4772323

• opentargets/gentropy

  Open Targets python framework for post-GWAS analysis

  Language:Jupyter Notebook33309

• amirfeizi/otargen

  This is an R package to retrieve data from Open Target Genetics

  Language:R8252