atgu/ukbb_pan_ancestry

Issues

• missing variant from tabix

  #109 opened 2 months ago by nzhun
  0

• Inquiry about running the code in the repo

  #104 opened 2 years ago by YuhaoTan2
  0

• Access to variants that are used in hgdp+1000g pca analysis.

  #95 opened 2 years ago by akhilpampana
  0

• Negative P-values in GWAS Results

  #87 opened 2 years ago by smsinks
  0

• Which age and sex fields were used as covariates?

  #90 opened 2 years ago by dvg-p4
  0

• l2.M_5_50 files per chromosome

  #73 opened 3 years ago by dianacornejo
  2

• Using with local Pan ukbb data

  #72 opened 3 years ago by jerome-f
  1

• n_cases_full_cohort_both_sexes for phecode 296 (Mood disorders) looks weird.

  #50 opened 3 years ago by Shicheng-Guo
  0

• LD score between 1000 genome and UKB-Pan

  #40 opened 4 years ago by Shicheng-Guo
  0

• Ancestry PCA

  #30 opened 4 years ago by samkleeman1
  0

• Choice of covariates

  #28 opened 4 years ago by swvanderlaan
  0

• Sex stratified analyses

  #27 opened 4 years ago by swvanderlaan
  0

• gnomad_lof/R/constants.R is missing

  #22 opened 4 years ago by Shicheng-Guo
  1

• Document LD matrix / score computation

  #10 opened 4 years ago by mkanai
  1

• When will preprint paper come out to describe this Pan-UKB work?

  #20 opened 4 years ago by Shicheng-Guo
  1

• UKBB-Pan-ancestry summary statistics is hg19 or hg38 based?

  #21 opened 4 years ago by Shicheng-Guo
  1

• document unique pheno

  #8 opened 4 years ago by konradjk
  0

• Document phecodes on wiki

  #7 opened 4 years ago by konradjk
  1

• Height missing for EUR

  #12 opened 5 years ago by konradjk
  0

• High AC (low MAC) variants should be filtered

  #4 opened 5 years ago by konradjk
  2

• document population assignments

  #9 opened 5 years ago by konradjk
  1

• Single sex phenotypes

  #6 opened 5 years ago by konradjk
  0

• All cancer phenotype

  #5 opened 5 years ago by konradjk
  0