anuprulez
Machine learning researcher/Data scientist, University of Freiburg, Germany. I love building scalable, reproducible machine learning toolkits.
@galaxyproject @BackofenLab @conda-forgeFreiburg, Germany
Pinned Repositories
BinaryTree
Operations on a Binary Tree
clade_prediction
Sequence generation/sequence to sequence learning using amino acid sequences of Corona virus (SARS-COV2) by training on generative adversial network (GAN)
galaxy_tool_recommendation
Galaxy tool recommendation
galaxy_tool_recommendation_transformers
Galaxy tool recommendation using transformers
GaussianProcessRegression
Gaussian Process Regression
ml-jupyter-notebook
GPU-enabled docker container with Jupyterlab for artificial intelligence
galaxytools
:microscope::books: Galaxy Tool wrappers
galaxy
Data intensive science for everyone.
training-material
A collection of Galaxy-related training material
gpu-jupyterlab-docker
GPU-enabled docker container with Jupyterlab for artificial intelligence
anuprulez's Repositories
anuprulez/Awesome-CV
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
anuprulez/galaxy_tool_recommendation_transformers
Galaxy tool recommendation using transformers
anuprulez/amazon-sagemaker-build-train-deploy
Scale complete ML development with Amazon SageMaker Studio
anuprulez/apu_label_propagation
anuprulez/bioconda-recipes
Conda recipes for the bioconda channel.
anuprulez/fine-tune-protTrans-repository
anuprulez/galaxy
Data intensive science for everyone.
anuprulez/galaxy-hub
Galaxy Community Hub
anuprulez/galaxytools
:microscope::books: Galaxy Tool wrappers
anuprulez/GeenuFF
Schema and API for a relational db that encodes gene models in an explicit, structured, and robust fashion.
anuprulez/gNetDGP
An End-to-End Graph Neural Network for Disease Gene Prioritization.
anuprulez/gpu_jupyterlab_paper_images
anuprulez/Helixer
Using Deep Learning to predict gene annotations
anuprulez/large_files_repository
Large files on GitHub
anuprulez/LLM-Engineers-Handbook
The LLM's practical guide: From the fundamentals to deploying advanced LLM and RAG apps to AWS using LLMOps best practices
anuprulez/LLMs-from-scratch
Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step
anuprulez/ml-sagemaker
Step by step to ML with AWS SageMaker
anuprulez/mlflow
Open source platform for the machine learning lifecycle
anuprulez/mlops
anuprulez/MLOps-Basics
anuprulez/MLOps_Cloud
Production ready ML models: Playground for ML model creating, evaluation and deployment
anuprulez/mxfold2
MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
anuprulez/nanodiag_biomarker_prediction
Gene/probe prioritization using Graph neural networks
anuprulez/nanosampler
anuprulez/nedbit_features_calculator
anuprulez/NIAPU
NIAPU: network-informed adaptive positive-unlabelled learning for disease genes identification
anuprulez/Predict-PTM-site-fine-tuning
Prediction of dephosphorylation sites using fine-tuned protein large models and integrate it as a Galaxy tool
anuprulez/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
anuprulez/training-material
A collection of Galaxy-related training material
anuprulez/usegalaxy-tools
usegalaxy.* common tools