anuprulez
Machine learning researcher/Data scientist, University of Freiburg, Germany. I love building scalable, reproducible machine learning toolkits.
@galaxyproject @BackofenLab @conda-forgeFreiburg, Germany
Pinned Repositories
BinaryTree
Operations on a Binary Tree
clade_prediction
Sequence generation/sequence to sequence learning using amino acid sequences of Corona virus (SARS-COV2) by training on generative adversial network (GAN)
galaxy_tool_recommendation
Galaxy tool recommendation
galaxy_tool_recommendation_transformers
Galaxy tool recommendation using transformers
GaussianProcessRegression
Gaussian Process Regression
ml-jupyter-notebook
GPU-enabled docker container with Jupyterlab for artificial intelligence
galaxytools
:microscope::books: Galaxy Tool wrappers
galaxy
Data intensive science for everyone.
training-material
A collection of Galaxy-related training material
gpu-jupyterlab-docker
GPU-enabled docker container with Jupyterlab for artificial intelligence
anuprulez's Repositories
anuprulez/similar_galaxy_workflow
Predict tools in Galaxy workflow (directed graph)
anuprulez/single_cell_analysis
anuprulez/Actualmed-COVID-chestxray-dataset
Actualmed COVID-19 Chest X-ray Dataset Initiative
anuprulez/amma
Atlas of Microglia-Microbiota in Aging
anuprulez/anndata
Annotated multivariate observation data
anuprulez/athero_clustering
anuprulez/attention_keras
Sequence to sequence classification using attention layer
anuprulez/course-v3
The 3rd edition of course.fast.ai
anuprulez/covid_vcf
COVID VCF data analysis
anuprulez/COVIDNet-CT
COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT
anuprulez/deepC
A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
anuprulez/deepimpute
An accurate and efficient deep learning method for single-cell RNA-seq data imputation
anuprulez/deeplearning-models
A collection of various deep learning architectures, models, and tips
anuprulez/DGP_end_to_end_CGN
An End-to-End Graph Neural Network for Disease Gene Prioritization
anuprulez/DTLDephos
anuprulez/EM-transcriptAbundances
Based on fork from TorHow
anuprulez/gcc2021-training
anuprulez/gene_exp_deep_learning
Predict cancer using gene expression
anuprulez/HiCPrediction
anuprulez/issues
anuprulez/ml_ls_jupyter_notebook
anuprulez/plant_image_label_recognition
anuprulez/Predicting-the-Emergence-of-SARS-CoV-2-Clades
code
anuprulez/rbc_docs
RBC de.NBI documents
anuprulez/SARS-CoV-2
Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures
anuprulez/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
anuprulez/scGAN
Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks
anuprulez/scGAT
Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attention Networks" to appear in ACM Proceedings. <https://arxiv.org/abs/2002.07128>
anuprulez/scIGANs
Generative adversarial networks for single-cell RNA-seq imputation
anuprulez/scvi-tools
Deep generative models for single-cell omics data