anuprulez
Machine learning researcher/Data scientist, University of Freiburg, Germany. I love building scalable, reproducible machine learning toolkits.
@galaxyproject @BackofenLab @conda-forgeFreiburg, Germany
Pinned Repositories
BinaryTree
Operations on a Binary Tree
clade_prediction
Sequence generation/sequence to sequence learning using amino acid sequences of Corona virus (SARS-COV2) by training on generative adversial network (GAN)
galaxy_tool_recommendation
Galaxy tool recommendation
galaxy_tool_recommendation_transformers
Galaxy tool recommendation using transformers
GaussianProcessRegression
Gaussian Process Regression
ml-jupyter-notebook
GPU-enabled docker container with Jupyterlab for artificial intelligence
galaxytools
:microscope::books: Galaxy Tool wrappers
galaxy
Data intensive science for everyone.
training-material
A collection of Galaxy-related training material
gpu-jupyterlab-docker
GPU-enabled docker container with Jupyterlab for artificial intelligence
anuprulez's Repositories
anuprulez/ml-jupyter-notebook
GPU-enabled docker container with Jupyterlab for artificial intelligence
anuprulez/clade_prediction
Sequence generation/sequence to sequence learning using amino acid sequences of Corona virus (SARS-COV2) by training on generative adversial network (GAN)
anuprulez/galaxy_tool_recommendation
Galaxy tool recommendation
anuprulez/gpu_jupyterlab_ct_image_segmentation
anuprulez/predict_animal_behaviour
Predicting animal behaviour using deep learning (https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.12926)
anuprulez/tool-resource-prediction
Tool Resource Prediction for Genomic Datasets
anuprulez/protein_transformers
anuprulez/alpaca-lora
Instruct-tune LLaMA on consumer hardware
anuprulez/bachelorproject
anuprulez/benthic-ensemble-paper
Code for the analysis and plots in the paper
anuprulez/bert-rbp
anuprulez/BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, data science and more
anuprulez/BirdDL
Deep Learning for Seabird Behaviour Prediction and Classification
anuprulez/cleanthesis
Clean Thesis is a clean, simple, and elegant LaTeX style (or template) for thesis documents.
anuprulez/ColabFold
Making Protein folding accessible to all via Google Colab!
anuprulez/COVID-CT-Segmentation
anuprulez/create-llms
anuprulez/DIVAnd-jupyterhub
jupyterhub docker image with DIVAnd pre-installed
anuprulez/docker-stacks
Ready-to-run Docker images containing Jupyter applications
anuprulez/experiment-github-actions-docker
anuprulez/Galaxy-ML
Make machine learning simpler with Galaxy
anuprulez/galaxy-test-data
Test data files used by Galaxy.
anuprulez/gpu-access-sync
Sync responses + approvals from a Google From with quotas in a live Galaxy instance
anuprulez/infrastructure-playbook
Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
anuprulez/LMSuccSite
Improving Protein Succinylation Sites Prediction Using Features Extracted from Protein Language Model
anuprulez/ml-compare-search-methods
All the codes I wrote for my project during summer internship.
anuprulez/MLLS-exercise-SS22
Example solutions for the 'Machine learning in life sciences' course SS22
anuprulez/pango-designation
Repository for suggesting new lineages that should be added to the current scheme
anuprulez/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
anuprulez/website
UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)