biocommons/uta

Issues

• Question on CIGAR strings in UTA

  #266 opened 2 months ago by budsonjelmont
  0

• Database download as JSON?

  #265 opened 3 months ago by DGMichael
  1

• Erroneous/duplicative HGNC names `ZHX1-C8ORF76` and `ZHX1-C8orf76`

  #264 opened 3 months ago by jsstevenson
  0

• sqlite support?

  #262 opened 5 months ago by anderspitman
  3

• UTA should use cigar strings from NCBI's gff files whenever possible

  #201 opened 7 months ago by reece
  5

• add new transcript digests

  #205 opened 7 months ago by reece
  5

• Update Ensembl data

  #207 opened 7 months ago by reece
  5

• collected notes for next update

  #221 opened 7 months ago by reece
  7

• uta schema overhaul

  #204 opened 8 years ago by reece
  4

• HGNC Values are Missing on Some Transcripts

  #217 opened 6 years ago by akeeeshi
  7

• Use entrez gene_ids rather than symbols to link genes and transcripts

  #203 opened 8 years ago by reece
  4

• RFC: Should we migrate to fully-justified alignments?

  #222 opened 5 years ago by reece
  4

• am37.c_to_g(hp.parse_hgvs_variant('NM_005117.2:c.295C>T')) fails with Alignment is incomplete.

  #216 opened 6 years ago by jfreidin
  4

• GRCh38 splign alignments available?

  #223 opened 9 months ago by deannachurch
  10

• ncbi-parse-gff error:

  #225 opened 9 months ago by ypchan
  6

• why I can not find table uta_20180821.meta ?(docker version)

  #227 opened 9 months ago by nordhuang
  5

• Building from a custom source

  #231 opened 9 months ago by sstadick
  4

• Workflow for adding updated refseq alignment data

  #236 opened 9 months ago by soensz01
  4

• Documentation for installing UTA locally on Mac

  #239 opened 9 months ago by korikuzma
  4

• Cannot connect to DB (and a variant question)

  #242 opened 9 months ago by pablosolar
  7

• Consider standardized schema for transcripts

  #241 opened 2 years ago by holtgrewe
  3

• Add support for the telomer-to-telomer assembly (T2T)

  #234 opened 3 years ago by andreasprlic
  4

• ENSEMBL transcripts not versioned

  #233 opened 4 years ago by ahwagner
  7

• 20210129 version not on dockerhub

  #232 opened a year ago by korikuzma
  4

• GHA for automating UTA

  #243 opened a year ago by ktennessenInvitae
  1

• Refreshing tx_similarity_mv takes several hours

  #228 opened a year ago by fdlk
  9

• Unable to use the uta_20210129 locally or in docker

  #237 opened a year ago by LydiePrevost
  8

• uta_20180821.pgd.gz dump seems to be incomplete

  #218 opened a year ago by AleksandrSl
  3

• solved

  #238 opened 2 years ago by asmlgkj
  2

• 1

  #235 opened 3 years ago by worker000000
  2

• is there difference between uta_20150827 and uta_20180821 in above commands?

  #226 opened 5 years ago by nordhuang
  1

• Enable custom transcripts and custom genome-transcript alignments

  #220 opened 5 years ago by reece
  3

• ncbi-parse-gbff error

  #224 opened 5 years ago by ypchan
  1

• Transcripts alignments with gaps in alignment record create bogus exon structures

  #200 opened 5 years ago by reece
  1

• Mismatch of genomic and transcript positions

  #211 opened 6 years ago by lacek
  0

• Public UTA instance is missing NM_020975.5, which differs from NM_020975.4:c.2307_2309GCG>TCA.

  #215 opened 6 years ago by jfreidin
  6

• Last version of uta database is absent from dockerhub

  #213 opened 6 years ago by AleksandrSl
  1

• postgres dumps - can't find them

  #206 opened 8 years ago by jpdna
  1

• update docker script to cache db dump in /tmp

  #202 opened 8 years ago by reece
  0

• Investigate UTA 20161024 anomalies

  #199 opened 8 years ago by reece
  2

• dummy issue

  #153 opened 8 years ago by reece
  0

• dummy issue

  #152 opened 8 years ago by reece
  0

• dummy issue

  #151 opened 8 years ago by reece
  0

• dummy issue

  #148 opened 8 years ago by reece
  0

• dummy issue

  #149 opened 8 years ago by reece
  0

• dummy issue

  #145 opened 8 years ago by reece
  0

• dummy issue

  #144 opened 8 years ago by reece
  0

• dummy issue

  #142 opened 8 years ago by reece
  0

• dummy issue

  #140 opened 8 years ago by reece
  0

• dummy issue

  #139 opened 8 years ago by reece
  0