biocore/American-Gut

Issues

• nbviewer error

  #218 opened 6 years ago by Vivisanc
  0

• Help running module2_v1.0 notebook

  #216 opened 8 years ago by diffyy
  1

• Move ipynb/cluster_utils.py to a new repo

  #58 opened 11 years ago by josenavas
  2

• Contested taxonomy groups should not necessarily show up as rare/unique

  #51 opened 8 years ago by wasade
  4

• Latest ipymd does not play well with ipython notebooks

  #210 opened 9 years ago by squirrelo
  1

• install trouble - conflicting ipython requirements

  #199 opened 8 years ago by cssmillie
  11

• Primary processing revitalized

  #161 opened 8 years ago by wasade
  1

• Add additional stats to taxonomy summary

  #72 opened 8 years ago by wasade
  1

• test_select_gamma.py fails with ImportError

  #71 opened 8 years ago by ElDeveloper
  1

• FloatingPointError in generate_otu_signficance_table.py

  #63 opened 8 years ago by wasade
  1

• generate_otu_significance_tables

  #65 opened 8 years ago by wasade
  1

• Add notebook to create module 1

  #61 opened 11 years ago by ElDeveloper
  1

• Use un-rarefied OTU table

  #60 opened 8 years ago by ElDeveloper
  26

• Remove any commas from participant's name before creating \yourname{} macro

  #56 opened 8 years ago by cuttlefishh
  6

• Improve description of how the OTU tables were created

  #54 opened 8 years ago by wasade
  1

• Template does not include barcode

  #41 opened 8 years ago by adamrp
  4

• Analysis Summary Pipeline

  #186 opened 9 years ago by jwdebelius
  0

• The way American-Gut repo was intended to be used?

  #204 opened 9 years ago by iugrina
  5

• conda_req and pip_req differences

  #203 opened 9 years ago by iugrina
  6

• Creation of 18S processing notebooks

  #206 opened 9 years ago by EmbrietteH
  0

• Generate PNG instead of PDF for per-sample-results

  #196 opened 9 years ago by squirrelo
  4

• Processing Notebooks

  #118 opened 9 years ago by jwdebelius
  1

• Generate ovals dynamically from PCoA data

  #68 opened 9 years ago by cuttlefishh
  1

• Conflicting Python resources and virtualenvs

  #180 opened 9 years ago by jwdebelius
  8

• Cannot import biom file in R

  #145 opened 9 years ago by arcys
  7

• Mislabeled metadata

  #146 opened 9 years ago by mortonjt
  2

• HMP table does not have taxonomy

  #141 opened 9 years ago by wasade
  1

• We need a contributing.md document

  #147 opened 10 years ago by jwdebelius
  0

• Add Travis CI

  #138 opened 10 years ago by adamrp
  0

• The shared_otus ipynb tries to download a file that no longer exists

  #135 opened 10 years ago by josenavas
  1

• Zeros truncated in AG data mapping file

  #130 opened 10 years ago by jwdebelius
  5

• Add round 8 acc to processing notebook

  #94 opened 11 years ago by wasade
  0

• American Gut logo on FAQ does is not a link

  #93 opened 11 years ago by adamrp
  0

• Moving this repository to biocore

  #59 opened 11 years ago by ElDeveloper
  4

• test_generate_otu_significance.py fails

  #39 opened 11 years ago by ElDeveloper
  6

• make_phyla_plots.py does not import correctly

  #42 opened 11 years ago by wasade
  1

• TaxTree tests are failing

  #37 opened 11 years ago by ElDeveloper
  2