bramvds

bramvds's Stars

• langchain-ai/langchain

  🦜🔗 Build context-aware reasoning applications

  Language:Jupyter Notebook105k7408.4k17.1k

• coder/code-server

  VS Code in the browser

  Language:TypeScript70.7k7303.6k5.8k

• mingrammer/diagrams

  :art: Diagram as Code for prototyping cloud system architectures

  Language:Python40.6k4065262.6k

• ivy-llc/ivy

  Convert Machine Learning Code Between Frameworks

  Language:Python14.2k6816.9k5.7k

• noDRM/DeDRM_tools

  DeDRM tools for ebooks

  Language:Python8.4k155653363

• py-why/dowhy

  DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

  Language:Python7.4k140490954

• Project-MONAI/MONAI

  AI Toolkit for Healthcare Imaging

  Language:Python6.3k903.2k1.2k

• csinva/imodels

  Interpretable ML package 🔍 for concise, transparent, and accurate predictive modeling (sklearn-compatible).

  Language:Jupyter Notebook1.4k2295124

• bashtage/arch

  ARCH models in Python

  Language:Python1.4k49213259

• aerdem4/lofo-importance

  Leave One Feature Out Importance

  Language:Python830122986

• woodrush/lambda-8cc

  x86 C compiler written in untyped lambda calculus

  Language:Common Lisp6518216

• ncbi-nlp/BioSentVec

  BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

  Language:Jupyter Notebook5911732100

• vincentarelbundock/marginaleffects

  R package to compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and ML models. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference

  Language:HTML51891.1k52

• TissueImageAnalytics/tiatoolbox

  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

  Language:Python415716088

• gao-lab/GLUE

  Graph-linked unified embedding for single-cell multi-omics data integration

  Language:Python407612258

• IanevskiAleksandr/sc-type

  Language:HTML25746748

• scverse/muon

  muon is a multimodal omics Python framework

  Language:Python2301211431

• aertslab/scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook214937339

• abidlabs/contrastive

  Contrastive PCA

  Language:Jupyter Notebook21092150

• kanaverse/kana

  Single cell analysis in the browser

  Language:JavaScript142612113

• openHPI/codeocean

  CodeOcean is an automated assessment tool for web-based coding exercises.

  Language:Ruby671211329

• Novartis/cellxgene-gateway

  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

  Language:Python61116434

• lcpilling/ukbrapR

  R package for working in the UK Biobank Research Analysis Platform (RAP)

  Language:R52181

• FelixTheStudent/cellpypes

  Cell type pipes for R

  Language:R511213

• epaull/TieDIE

  Tied Diffusion for Subnetwork Discovery (TieDIE)

  Language:Python3710522

• jmpsteen/medflex

  Flexible mediation analysis using natural effect models in R

  Language:R236276

• anna-neufeld/countsplit

  Language:R20281

• gevaertlab/AMARETTO

  Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression

  Language:R169612

• GabrielHoffman/dream_analysis

  Simulation and data analysis code for dream paper

  Language:HTML10212

• AldisiRana/GenRisk

  A python package that implements gene-based scoring system, association analysis, visualization, and machine learning models

  Language:Python8124