IanevskiAleksandr/sc-type

Issues

• bubble plot Duplicate vertex and edges name names

  #69 opened 3 months ago by gianmore
  0

• a bug in auto_detect_tissue_type.R

  #68 opened 3 months ago by gnilihzeux
  0

• Different cell type scoring dependent on subsamples used

  #67 opened 5 months ago by ahoffrichter
  0

• Error in Z[cell_markers_genes_score[jj, "gene_"], ] : subscript out of bounds

  #65 opened 7 months ago by Flu09
  1

• duplicated clusters predicted by sc-type

  #66 opened 6 months ago by jasoncrucify
  0

• selecting multiple tissues for analysis

  #64 opened 8 months ago by rocanja
  2

• Several questions

  #52 opened 10 months ago by KevinMaroney
  2

• Bug report

  #63 opened 8 months ago by rocketeer1998
  4

• Wrong repository

  #62 opened 9 months ago by levinhein
  0

• Barcode file missing

  #61 opened 9 months ago by haotianteng
  1

• Discrepancies in tissue types in ScTypeDB_full.xlsx vs. ScType web app

  #59 opened 9 months ago by saracastel
  2

• auto_detect_tissue_type error

  #46 opened 10 months ago by antoine4ucsd
  2

• General question about the logic of the tool

  #54 opened 10 months ago by Flu09
  4

• sc-type "$<-.data.from" error

  #43 opened 10 months ago by beemeeee
  1

• Error in UseMethod("group_by") : no applicable method for 'group_by' applied to an object of class "NULL"

  #44 opened 10 months ago by changostraw
  1

• "Embryo" sample gene details

  #45 opened 10 months ago by kvn95ss
  1

• auto_detect_tissue_type incompatible with a recent change in Seurat

  #47 opened 10 months ago by bhayete-empress
  4

• get cell-type by cell matrix

  #48 opened 10 months ago by taha1750
  2

• Cannot find updated db.xlsx file

  #49 opened 10 months ago by Larrycpan
  1

• data or scaled data for scoring

  #53 opened 10 months ago by Yongli-Qi
  1

• Cannot open the connection to gene_sets_prepare.R

  #50 opened a year ago by Daisy-Chilin
  1

• Differences between short e full DB

  #51 opened a year ago by martina811
  1

• Mouse scRNAseq data annotation

  #42 opened a year ago by zhongguozhiwang
  0

• Scaling Only Marker Genes

  #41 opened a year ago by shahrozeabbas
  1

• unable to load example data or own file

  #39 opened a year ago by mocherry
  1

• Malignant cells?

  #40 opened a year ago by SirKuikka
  2

• bubble plot vizualization with gridExtra::grid.arrange over scater::multiplot

  #34 opened a year ago by pseudacriscrucifer
  1

• Does adapting this to use with scATACseq make sense, with coordinates instead of genes?

  #37 opened a year ago by ahdee
  1

• Could the detection of oligodendrocytes be possibly improved?

  #33 opened 2 years ago by LASeeker
  3

• bubble plot vizualization: the inner bubbles correspond to considered cell types for each cluster,

  #38 opened a year ago by Sophon-0
  1

• Annotate the mouse scRNA data

  #27 opened 2 years ago by yangfeizZZ
  2

• Can I add some markers that are not in gs_list

  #36 opened a year ago by ryf0810
  0

• Error in checkGeneSymbols(markers_all) : could not find function "checkGeneSymbols"

  #31 opened 2 years ago by lbbars
  1

• How to view the main marker genes in the SC type score?

  #35 opened a year ago by suhuanhou
  0

• Annotate cell clusters when rownames are transcript IDs

  #32 opened 2 years ago by gadepallivs
  0

• scale.data for SCTransformed and integrated datasets

  #29 opened 2 years ago by caro471
  0

• Illegal gene symbols

  #30 opened 2 years ago by bhanco
  0

• Is it suitable for lung cancer scRNA-seq analysis?

  #28 opened 2 years ago by wisRen
  2

• SNV analysis from the paper

  #26 opened 2 years ago by pedriniedoardo
  1

• summary table

  #21 opened 2 years ago by antoine4ucsd
  2

• documentation for sc-type

  #24 opened 2 years ago by cathalgking
  1

• Cluster settings in web app

  #25 opened 2 years ago by FrankStarling
  1

• Quickstart - Missing dependency "openxlsx"

  #23 opened 2 years ago by aerickso
  1

• 'Rcpp_precious_remove' not provided by package 'Rcpp'

  #22 opened 2 years ago by ChaseTaylor939
  3

• Error: Failed to install 'unknown package' from GitHub

  #20 opened 2 years ago by akhst7
  1

• pbmc_final.RDS file doesn't have any cell-type annotation information in its "Idents"

  #19 opened 2 years ago by h-waybi
  0

• Error in base::rowSums(x, na.rm = na.rm, dims = dims, ...): 'x' must be an array with at least two dimensions

  #17 opened 2 years ago by Tommaso12
  12

• Where can I find the open-source for portal (http://sctype.app) ？

  #18 opened 2 years ago by bitcometz
  1

• ADT Inquiry

  #15 opened 2 years ago by ejc043
  1

• How to run in a silent mode?

  #16 opened 2 years ago by hongjianjin
  1