bridgedb/datasources

Issues

• request for adding this species: Rosmarinus officinalis

  #50 opened 3 months ago by egonw
  4

• request for adding this species: Solanum tuberosum

  #45 opened 5 months ago by egonw
  2

• example_identifier for SwissProt

  #11 opened 5 months ago by ariutta
  2

• Unrecognised HGNC URI pattern

  #6 opened 5 months ago by ianwdunlop
  4

• Update datasources.tsv

  #9 opened 5 years ago by DeniseSl22
  1

• update the namespace for HGNC and Ensembl

  #44 opened 5 months ago by tabbassidaloii
  4

• Incorrect linkout patterns or example identifiers

  #8 opened 5 months ago by ariutta
  4

• figure out the state of EcoGene

  #49 opened 5 months ago by egonw
  0

• figure out new URL pattern of MatrixDB

  #48 opened 5 months ago by egonw
  0

• Many non https addresses in the tsv files

  #20 opened 5 months ago by Chris-Evelo
  6

• Look into bioregistry prefix for OpenTargets

  #37 opened 9 months ago by hasanbalci
  1

• ensure alignment with Bioregistry.io

  #42 opened a year ago by egonw
  1

• ensure alignment with Identifiers.org

  #41 opened a year ago by egonw
  1

• Update BridgeDb Datasources for UniProtKB

  #40 opened a year ago by egonw
  1

• Agree on reusing the "S" system code

  #39 opened a year ago by egonw
  2

• Agree on using "UniProtKB" as full name

  #38 opened a year ago by egonw
  2

• Curate remaining entries to the Bioregistry

  #29 opened 3 years ago by cthoyt
  7

• Update HGNC linkouts

  #12 opened 2 years ago by DeniseSl22
  15

• Minor: column names are not great

  #19 opened 2 years ago by AlexanderPico
  2

• Incorrect linkout patterns for Gramene Rice and Rice Ensembl Gene

  #3 opened 2 years ago by ariutta
  1

• Add Bioregistry prefix column

  #22 opened 3 years ago by cthoyt
  1

• WikiPathways linkouts

  #2 opened 4 years ago by fehrhart
  8

• Unclear origin of the UCSC genome browser "uc\d{3}[a-z]{3}\.\d" type identifier

  #17 opened 4 years ago by egonw
  0

• Add taxonomy IDs to organism table

  #10 opened 4 years ago by AlexanderPico
  0

• update of VMH metabolite links

  #1 opened 4 years ago by ithiele
  2

• Which system codes for ChEMBL?

  #7 opened 9 years ago by stain
  6

• Miriam identifiers for Gramene sources in datasources.txt

  #4 opened 9 years ago by ariutta
  6