callumparr

callumparr's Stars

• deezer/spleeter

  Deezer source separation library including pretrained models.

  Language:Python25.9k3877732.8k

• quinlan-lab/applied-computational-genomics

  Applied Computational Genomics Course at UU: Spring 2020

  Language:HTML943898210

• nanopore-wgs-consortium/NA12878

  Data and analysis for NA12878 genome on nanopore

  Language:Python375538792

• BrooksLabUCSC/flair

  Full-Length Alternative Isoform analysis of RNA

  Language:Python2111434071

• nanoporetech/megalodon

  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

  Language:Python1972134630

• mortazavilab/TALON

  Technology agnostic long read analysis pipeline for transcriptomes

  Language:Python134514331

• Psy-Fer/SquiggleKit

  SquiggleKit: A toolkit for manipulating nanopore signal data

  Language:Python122135823

• nanoporetech/taiyaki

  Training models for basecalling Oxford Nanopore reads

  Language:Python1153910142

• GoekeLab/m6anet

  Detection of m6A from direct RNA-Seq data

  Language:Python107710719

• nanoporetech/pipeline-transcriptome-de

  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

  Language:Python106213127

• biocorecrg/master_of_pores

  Nextflow pipeline for analysis of direct RNA Nanopore reads

  Language:Nextflow93911116

• nanoporetech/pychopper

  A tool to identify, orient, trim and rescue full length cDNA reads

  Language:Python80235722

• artic-network/rampart

  Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

  Language:JavaScript79168534

• ucagenomix/sicelore

  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.

  Language:Java7157714

• ENCODE-DCC/long-read-rna-pipeline

  ENCODE long read RNA-seq pipeline

  Language:wdl4410313

• nanoporetech/Pore-C-Snakemake

  Language:Python33224715

• comprna/CHEUI

  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

  Language:C++3213422

• thelovelab/rnaseqDTU

  RNA-seq workflow: differential transcript usage

  Language:TeX209311

• hanyue36/nanoplexer

  Tool for demultiplexing Nanopore barcode sequence data

  Language:C172112

• KCCG/rageseq

  RAGE-seq scripts

  Language:Perl17853

• jts/nanopore-rna-analysis

  Language:Python14825

• smaegol/nanotail

  R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

  Language:R10345

• christopher-vollmers/Mandalorion-Episode-II

  Version II of Mandalorion

  Language:Python6401

• mortazavilab/TALON-paper-2020

  References and analyses for updated TALON paper

  Language:Jupyter Notebook3232

• callumparr/fastq-filter

  Quality and length filter for FastQ data

  Language:Python1200