Issues
- 2
Brass Notation - Understanding Breakpoints
#120 opened by LB1907 - 0
No data survived filtering
#119 opened by ruolin - 0
Security vulnerabilities in current container image
#118 opened by verdurin - 2
Iterations must be a positive integer: 0 at /opt/wtsi-cgp/bin/brass.pl line 83.
#117 opened by DingTin - 3
Poor inversion recall performance in BAM files with a high amount of variants
#114 opened by Rapsssito - 0
What kind of file does the parameter "-d" require?
#116 opened by DingTin - 0
No read groups listed
#115 opened by bettinabudeus - 0
Poor perfomance in sparse BAM files
#113 opened by Rapsssito - 7
getting POS of 0
#110 opened by anoronh4 - 4
Any way to ignore PL in bam?
#112 opened by anoronh4 - 1
Should be an existing file
#111 opened by mdbarnesUCSD - 1
Regions of excessive sequencing depth for hg38
#109 opened by zhujack - 2
Docker/Singularity quay.io not found
#108 opened by mdbarnesUCSD - 1
Question: Does BRASS support exomes?
#107 opened by anoronh4 - 3
- 0
duplicate records for inversions
#105 opened by sb43 - 0
Bedtools problem with get_rg_cns.R
#104 opened by jsmedmar - 4
how to optimize performance
#103 opened by anoronh4 - 0
Issue with creating tmp directory
#102 opened by anoronh4 - 4
unused argument (cytoband_file = cytoband_file) - caused by Rlib - gam incompatibility
#91 opened by podro182 - 4
centromere telomere file
#101 opened by mjko1210 - 0
Performance improvement - input step
#100 opened by keiranmraine - 0
- 0
- 0
Document docker/singularity
#97 opened by keiranmraine - 1
Generating an input bas?
#96 opened by cboursnell - 8
Error in get_abs_bkpts_from_clipped_reads.pl
#95 opened by udvzol - 0
- 0
Travis CI file needs update
#89 opened by rulixxx - 1
Required params not checked
#93 opened by keiranmraine - 10
bedpe ann error
#77 opened by gbnci - 1
- 4
Readgroup does not exist
#90 opened by podro182 - 0
Sample statistics file is required
#85 opened by kathryn-beal - 0
blatSrc has moved
#86 opened by keiranmraine - 1
Fail when RG==0
#80 opened by ym3 - 0
Speedup - input step
#84 opened by keiranmraine - 1
error and quit for brass run
#75 opened by gbnci - 1
Is RC the same as SR?
#83 opened by ggrimes - 5
Error: Sanger_CGP_Brass_Implement_group.0.err" unexpectedly returned exit value 1
#81 opened by Dorical - 1
conda installation issues
#82 opened by alongalor - 6
Error in get_abs_bkpts_from_clipped_reads.pl
#66 opened by hfl112 - 2
- 1
BRASS filter generation fails with an uninformative error when *.bas not present
#71 opened by edawson - 9
Brass produces output but returns code 255
#73 opened by edawson - 1
bedpe to vcf conversion is not correct
#78 opened by zhujack - 0
Blat path not exist
#76 opened by gbnci - 1
depth parameter
#74 opened by gbnci - 6
Implement_group error
#67 opened by BastienNguyen - 1
Clarification: Penalty for finding aberrant pairs for PON separately vs jointly
#72 opened by edawson