Issues
- 2
- 6
Support for Arima High coverage Hi-C kit
#61 opened by Norbittner - 1
Add example data and results and extend docs
#49 opened by cerebis - 0
Enzyme-free protocol
#62 opened by gubrins - 0
- 7
- 2
Failure to catch missing header exception
#59 opened by cerebis - 0
- 0
Duplicates, flags, tallying and MultiQC report
#50 opened by cerebis - 0
Input/Output documentation additiion
#55 opened by cerebis - 0
Accommodating mismatches in ligation artefacts.
#56 opened by cerebis - 0
- 0
Extended main help to better explain modes
#53 opened by cerebis - 0
- 0
Handling of split R1/R2 bam files
#51 opened by cerebis - 4
- 0
Rename jellyfish conda package
#48 opened by cerebis - 4
qc3C conda failure on CentOS8
#43 opened by koadman - 1
samtools missing from qc3C docker container path
#45 opened by koadman - 1
qc3c missing from path when run via singularity
#44 opened by koadman - 1
Cut-site databases saved to filesystem are not backwards portable to older Python.
#46 opened by cerebis - 0
- 0
- 0
- 0
Counting FastA returns 0
#31 opened by cerebis - 1
Improve docker useability after more use
#25 opened by cerebis - 1
Running singularity container without arguments produces esoteric error message
#26 opened by cerebis - 9
Natural occurrence estimation and correction
#35 opened by cerebis - 1
- 0
- 0
Check for input files as soon as possible
#36 opened by cerebis - 2
Validate on less commonly used enzymes
#19 opened by cerebis - 1
could track both full cut-site and vestigal
#20 opened by cerebis - 1
Handle restriction enzymes with ambiguous sites
#32 opened by cerebis - 1
Denominator in long-range fraction
#28 opened by cerebis - 0
- 0
Add pigz to docker images
#29 opened by cerebis - 0
Add version and time stamps to JSON report
#30 opened by cerebis - 1
Output report in easily parsed format
#16 opened by cerebis - 1
qc3C depends on samtools
#24 opened by cerebis - 0
- 1
qc3C docker and singularity
#23 opened by cerebis - 0
Add docker/singlularity details to documentation
#21 opened by cerebis - 0
- 0
Fuzzier evidence of junctions
#18 opened by cerebis - 0
Expected fraction at 50% GC
#13 opened by cerebis - 0
- 0
- 0
update read me for new CLI changes
#14 opened by cerebis - 1
log file should include reproducible details.
#12 opened by cerebis