Pinned Repositories
AFPAP
AlphaFold-based Protein Analysis Pipeline
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
awesome-deep-learning-papers
The most cited deep learning papers
awesome-multi-omics
List of software packages for multi-omics analysis
bbplot
Grammar of Graphics for base plot
benchdamic
Benchmark of differential abundance methods on microbiome data
bioconductor-workshop-2
biotools
A list of useful bioinformatics resources
ChIP-AP
An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
kraken2_classification
Snakemake workflow for metagenomic classification with Kraken2
changrong1023's Repositories
changrong1023/kraken2_classification
Snakemake workflow for metagenomic classification with Kraken2
changrong1023/AFPAP
AlphaFold-based Protein Analysis Pipeline
changrong1023/bbplot
Grammar of Graphics for base plot
changrong1023/benchdamic
Benchmark of differential abundance methods on microbiome data
changrong1023/ChIP-AP
An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
changrong1023/Comparison_of_DA_microbiome_methods
changrong1023/Cloud-Bind
Cloud-based Drug Binding Structure Prediction
changrong1023/gget
gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.
changrong1023/gorilla
Gorilla: An API store for LLMs
changrong1023/gpt_academic
为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。
changrong1023/immunarch
🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
changrong1023/Jupyter_Dock
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
changrong1023/llama-gpt
A self-hosted, offline, ChatGPT-like chatbot. Powered by Llama 2. 100% private, with no data leaving your device.
changrong1023/making-it-rain
Cloud-based molecular simulations for everyone
changrong1023/MetabComparisonBinaryML
https://cimcb.github.io/MetabComparisonBinaryML/
changrong1023/MetabProjectionViz
https://cimcb.github.io/MetabProjectionViz/
changrong1023/Metagenomics_tools
changrong1023/neatseq-flow-modules
Shared Modules and Workflows for NeatSeq-Flow
changrong1023/nipype_tutorial
Learn Nipype with these tutorial notebooks - go here to see them online -->
changrong1023/Omix
A Multi-Omics Integration Pipeline
changrong1023/ordinalVS
High-dimensional variable selection for ordinal outcomes with error control
changrong1023/ParametrizANI
Dihedral Parametrization in the Cloud with TorchANI
changrong1023/PickyBinder
Docking Tool Benchmarking Workflow
changrong1023/plantain
Fast and accurate molecular docking with an AI pose scoring function
changrong1023/rstudio-themes
A collection of themes for RStudio
changrong1023/scRNA-seq_online
changrong1023/search_with_lepton
Building a quick conversation-based search demo with Lepton AI.
changrong1023/TOFU-MAaPO
Nextflow pipeline for the analysis of metagenomic short reads.
changrong1023/workshop_omics_integration
Workshop in omics integration and systems biology
changrong1023/WorkshopMDMLEdinburgh2022