chenghongdeng

chenghongdeng's Stars

• fastlmm/bed-reader

  A library for easy, fast, and efficient reading & writing of PLINK Bed files

  Language:Rust732239

• LabTranslationalArchitectomics/riboWaltz

  optimization of ribosome P-site positioning in ribosome profiling data

  Language:HTML4478011

• sunyumail93/PipeRNAseq

  A comprehensive pipeline for RNAseq data analysis

  Language:Shell22312

• sunyumail93/PipeRiboseq

  A comprehensive pipeline for Ribo-seq data analysis

  Language:Shell10212

• dgelsin/mRibo

  Program for analyzing microbial ribosome profiling data

  Language:Python5230

• cgob/codonDT_snakemake

  Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).

  Language:R4254

• JieWu2012/Codon_occupancy_cal

  Language:Shell3101

• lxlscc0715/scripts-for-ribosome-profiling-and-RNA-seq

  Language:Perl300

• romikasaini/Pausepred_offline

  This repository provides the scripts for the PausePred tool. The PausePred is designed to predict translational halts using ribosome footprint density information obtained from ribosomal profiling data.

  Language:Perl2133

• sunyumail93/Python3_StepByStep

  A step-by-step 10-day Python3 tutorial designed for bioinformatician

  Language:Python2201

• alenzhao/RiboProfiling

  This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/RiboProfiling.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=RiboProfiling.

  Language:R120

• elonganrochester/ADATscan

  Scripts and test files for running ADATscan

  Language:Python111

• katchyz/stalling

  Language:R1202

• lamonasapiens/rebelScience_youtube

  Practice bioinformatics with youtube channel rebelScience

  Language:Python120