Pinned Repositories
bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
chembl-downloader
Write reproducible code for getting and processing ChEMBL
class-resolver
🔍 Lookup classes and instantiate them with style
cookiecutter-snekpack
🍪 A cookiecutter package for an enlightened python package
drugbank-downloader
Don't worry about DrugBank licensing - write code that knows how to download it automatically
pystow
👜 Easily pick a place to store data for your Python code.
umls_downloader
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
pybel
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
cthoyt's Repositories
cthoyt/drugbank_downloader
Don't worry about DrugBank licensing - write code that knows how to download it automatically
cthoyt/geometric-graphs
Generate knowledge graphs with interesting geometries, like lattices
cthoyt/more_click
Extra stuff for click I use in basically every repo
cthoyt/scikit-kge
Python library to compute knowledge graph embeddings
cthoyt/archivo
DBpedia Archivo - Augmented Ontology Archive powered by Databus
cthoyt/chemicalx
A PyTorch based deep learning library for drug-drug interaction, polypharmacy side effect and synergy prediction.
cthoyt/Climate-System-Ontology-CSO
An ontology for Climate system
cthoyt/cob-root-analysis
cthoyt/cthoyt
My GitHub profile
cthoyt/Decapodes.jl
A framework for composing and simulating multiphysics systems
cthoyt/developmental-stage-ontologies
Source files for various species-specific stage ontologies
cthoyt/downloaders
Python package to handle download of multiple types of files.
cthoyt/efo
Github repo for the Experimental Factor Ontology (EFO)
cthoyt/family
Visualization and Exploration of the Hoyt and Grave Family Trees
cthoyt/gilda
Grounding of biomedical named entities with contextual disambiguation
cthoyt/IAO
information artifact ontology
cthoyt/joss-reviewer-recommender
cthoyt/LaNaPDB
Natural products from Latin America.
cthoyt/monarch-mapping-commons
Building a fully exectuable workflow for boomer
cthoyt/mondo
Mondo Disease Ontology
cthoyt/mpath
Automatically exported from code.google.com/p/mpath
cthoyt/ndex2-client
NDEx2 Client v1.0
cthoyt/OBO-Dashboard
Summary Dashboard for Open Biological and Biomedical Ontologies
cthoyt/py-acsets
cthoyt/rdkit
The official sources for the RDKit library
cthoyt/rexmex
A general purpose recommender metrics library for fair evaluation.
cthoyt/rsc-cmo
Chemical Methods Ontology
cthoyt/selventa-knowledge
Updated versions of the Selventa Small and Large Corpus
cthoyt/SO-Ontologies
Collect of SO Ontologies
cthoyt/UGM_2023
Materials from the 2023 RDKit UGM