cthoyt

On sabbatical - unable to respond

@northeasternBonn, Germany

Pinned Repositories

bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
Language:Python120 9 53053
pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
Language:Python61 3 11215
chembl-downloader
Write reproducible code for getting and processing ChEMBL
Language:Jupyter Notebook69 4 412
class-resolver
🔍 Lookup classes and instantiate them with style
Language:Python63 4 149
cookiecutter-snekpack
🍪 A cookiecutter package for an enlightened python package
Language:Python35 4 217
drugbank-downloader
Don't worry about DrugBank licensing - write code that knows how to download it automatically
Language:Python38 3 28
pystow
👜 Easily pick a place to store data for your Python code.
Language:Python36 4 236
umls_downloader
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
Language:Python33 2 34
pybel
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
Language:Python131 9 39432
pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
Language:Python1.7k 27 553189

cthoyt's Repositories

cthoyt/geometric-graphs
Generate knowledge graphs with interesting geometries, like lattices
Language:Python5 2 1
cthoyt/more_click
Extra stuff for click I use in basically every repo
Language:Python5 3 01
cthoyt/biomappings
🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
Language:Jupyter Notebook1 0
cthoyt/BTO
BRENDA Tissue Ontology
Language:Makefile1 0
cthoyt/cachier
Persistent, stale-free, local and cross-machine caching for Python functions.
Language:Python2 0
cthoyt/cell-ontology
An ontology of cell types
Language:Makefile
cthoyt/Climate-System-Ontology-CSO
An ontology for Climate system
1 0
cthoyt/cob-root-analysis
Language:Python2 0
cthoyt/cthoyt
My GitHub profile
4 01
cthoyt/Decapodes.jl
A framework for composing and simulating multiphysics systems
Language:Julia1 0
cthoyt/developmental-stage-ontologies
Source files for various species-specific stage ontologies
Language:Makefile2 0
cthoyt/downloaders
Python package to handle download of multiple types of files.
Language:Python1 0
cthoyt/efo
Github repo for the Experimental Factor Ontology (EFO)
Language:Makefile1 0
cthoyt/family
Visualization and Exploration of the Hoyt and Grave Family Trees
Language:Jupyter Notebook3 0
cthoyt/gilda
Grounding of biomedical named entities with contextual disambiguation
Language:Python2 0
cthoyt/IAO
information artifact ontology
Language:Common Lisp1 0
cthoyt/immutabledict
A fork of frozendict, an immutable wrapper around dictionaries for Python3
Language:Python1 0
cthoyt/joss-reviewer-recommender
Language:Python2 0
cthoyt/monarch-mapping-commons
Building a fully exectuable workflow for boomer
1 0
cthoyt/mondo
Mondo Disease Ontology
Language:Jupyter Notebook
cthoyt/ndex2-client
NDEx2 Client v1.0
Language:Python3 0
cthoyt/OBO-Dashboard
Summary Dashboard for Open Biological and Biomedical Ontologies
Language:Python1 0
cthoyt/obo-relations
RO is an ontology of relations for use with biological ontologies
Language:Jupyter Notebook2 0
cthoyt/ontogpt
GPT-based ontological extraction tools, including SPIRES
cthoyt/rdflib-endpoint
💫 Deploy SPARQL endpoints from RDFLib Graphs to serve RDF files, machine learning models, or any other logic implemented in Python
Language:Python1 0
cthoyt/rdkit
The official sources for the RDKit library
cthoyt/rsc-cmo
Chemical Methods Ontology
cthoyt/selventa-knowledge
Updated versions of the Selventa Small and Large Corpus
Language:Python4 63
cthoyt/SO-Ontologies
Collect of SO Ontologies
Language:Makefile1 0
cthoyt/SSSOM
Simple Standard for Sharing Ontology Mappings
Language:Python