dgelsin

dgelsin's Stars

• mwouts/jupytext

  Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts

  Language:Python6.7k72689392

• daattali/beautiful-jekyll

  ✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

  Language:HTML5.5k8439016.5k

• randy3k/radian

  A 21 century R console

  Language:Python2.1k2643876

• stephenturner/oneliners

  Useful bash one-liners for bioinformatics.

  1.9k15510518

• Pebaz/nimporter

  Compile Nim Extensions for Python On Import!

  Language:Python838185833

• skovaka/UNCALLED

  Raw nanopore signal mapper that enables real-time targeted sequencing

  Language:C++523135745

• bxlab/metaWRAP

  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

  Language:Shell40817551190

• NCBI-Hackathons/EDirectCookbook

  161334954

• louiejtaylor/grabseqs

  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

  Language:Python10573916

• molbio-dresden/flexidot

  Highly customizable, ambiguity-aware dotplots for visual sequence analyses

  Language:Python9051216

• alexcritschristoph/Qiime16sTutorial

  A tutorial on methods of 16S analysis with QIIME 1

  Language:HTML6918128

• fjossinet/RNArtistCore

  A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.

  Language:Kotlin26265

• wilkelab/Opfi

  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.

  Language:Python216815

• jbisanz/MicrobeR

  Handy tools for Microbiome analysis in R

  Language:HTML18624

• alexcritschristoph/MicrobialGenomicsScripts

  A selection of short scripts for analyzing microbial genomes

  Language:Python14406

• mtisza1/Cenote-Taker

  DEPRECATED: Use Cenote-Taker 3 instead

  Language:Shell14102

• RickGelhausen/HRIBO

  We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.

  Language:Python115314

• SDmetagenomics/ETsuite

  Suite of Tools for ET-seq Informatic Workflow

  Language:R8400

• sternberglab/CAST-guide-RNA-tool

  Program for INTEGRATE guide RNA generation and off-target evaluation

  Language:Python8363

• neksa/reproducible-research-guidelines

  Guidelines for accountable and reproducible computational research

  7200

• ursky/SnapT

  Small ncRNA annotation pipeline for transcriptomics

  Language:Shell7342

• dgelsin/mRibo

  Program for analyzing microbial ribosome profiling data

  Language:Python6231

• greenlabjhmi/2018_Bacterial_Pipeline_riboseq

  Ribosome profiling pipeline for bacterial samples created by Fuad Mohammad.

  Language:Jupyter Notebook6225

• khturner/metaRNA-seq

  Custom scripts for creating and annotating multispecies bacterial metagenomes

  Language:Shell5302

• ajwije/150826_pathway_analysis

  Language:R33011

• GCA-VH-lab/RiboSeqPy

  Collection of routines for processing Ribo-Seq data.

  Language:Python3200

• adelomana/30sols

  Computational tools for the study of translational regulation.

  Language:Jupyter Notebook1300

• dgelsin/2018_Bacterial_Pipeline_riboseq

  Ribosome profiling pipeline for bacterial samples created by Fuad Mohammad.

  Language:Python1200

• dgelsin/ArcPP

  Archaeal Proteome Project

  Language:Python1100