durubing-jn

durubing-jn's Stars

• chemprop/chemprop

  Message Passing Neural Networks for Molecule Property Prediction

  Language:Python1.7k37530574

• arpcard/rgi

  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

  Language:Python3271924476

• wwood/CoverM

  Read coverage calculator for metagenomics

  Language:Rust2991116130

• jiarong/VirSorter2

  customizable pipeline to identify viral sequences from (meta)genomic data

  Language:Python217421029

• AnantharamanLab/METABOLIC

  A scalable high-throughput metabolic and biogeochemical functional trait profiler

  Language:Perl173418143

• chklovski/CheckM2

  Assessing the quality of metagenome-derived genome bins using machine learning

  Language:Scilab165910419

• biocore/emp

  Code repository of the Earth Microbiome Project.

  Language:Jupyter Notebook156516868

• TongZhou2017/itol.toolkit

  Helper Functions for Interactive Tree Of Life (iTOL)

  Language:R15151617

• grunwaldlab/metacoder

  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

  Language:R1351735528

• BinPro/CONCOCT

  Clustering cONtigs with COverage and ComposiTion

  Language:Python122822548

• taowenmicro/ggClusterNet

  Microbial ecological network visualization clustering

  Language:R9352244

• mayuefine/c_AMPs-prediction

  Language:Python7201235

• patrickwest/EukRep

  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets

  Language:Python6922012

• BigDataBiology/macrel

  Predict AMPs in (meta)genomes and peptides

  Language:Python635239

• snayfach/MAGpurify

  Improvement of metagenome-assembled genomes

  Language:Python4822312

• Carrion-lab/bacLIFE

  Language:Python274

• GaryLiu152/chemprop_abaucin

  Personal branch of chemprop used to predict the antibiotics Abaucin

  Language:Python24318

• amirpandi/Deep_AMP

  Generator and regressor neural networks for antimicrobial peptides

  Language:PureBasic21105

• microbiota/Zhang2019NBT

  Scripts for stat and plot figures in rice microbiome paper

  Language:HTML191028

• danny-wilson/genomegaMap

  Within-species genome-wide dN/dS estimation from very many genomes

  Language:C18273

• SushiLab/magpipe

  Language:R18425

• xinghd142857/PU-EPP

  This repository contains the positive-unlabeled learning-based enzyme promiscuity prediction model as described in the paper Deep learning Enables Rapid Identification of Mycotoxin-degrading Enzymes.

  Language:Jupyter Notebook13314

• maslov-group/ML_human_gut

  Language:Jupyter Notebook9314

• durubing-jn/food-fermentation-mategenome

  Language:Python5101

• Helmholtz-HIPS/clustomatic_source

  TEST repository for clustomatic project

  Language:Python3

• FunCongWang/CForBio.metagenome

  R script for analyzing and plotting metagenome data from Chinese forest soils

  Language:HTML2

• yxllab-hku/speco

  Short Peptide and Enzyme Co-Occurrence analysis pipeline

  Language:Python2

• arijitnus/Plant_Biosynthetic_gene_cluster

  Code for Manuscript

  Language:R1100

• bbaker567/phylogenetics

  Language:Python1

• yxllab-hku/correlational-network

  Codes for Correlational networking guides the discovery of cryptic natural product biosynthetic enzymes

  Language:R11