ecastron's Stars
tombonez/noTunes
A simple macOS application that will prevent iTunes or Apple Music from launching.
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
quinlan-lab/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
crazyhottommy/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
trinityrnaseq/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
jjallaire/deep-learning-with-r-notebooks
R notebooks for the code samples of the book "Deep Learning with R"
rrwick/Unicycler
hybrid assembly pipeline for bacterial genomes
fbreitwieser/krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
zdk123/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
PitchInteractiveInc/Phinch
Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project represents an interdisciplinary collaboration between Pitch Interactive, a data visualization studio in Oakland, CA, and biological researchers at UC Riverside.
FePhyFoFum/phyx
phylogenetics tools for linux (and other mostly posix compliant) computers
donovan-h-parks/CompareM
A toolbox for comparative genomics.
HRGV/phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
alexcritschristoph/Qiime16sTutorial
A tutorial on methods of 16S analysis with QIIME 1
adw96/breakaway
Species richness with high diversity
xavierdidelot/TransPhylo
Reconstruction of transmission trees using genomic data
csmiller/EMIRGE
EMIRGE reconstructs full length ribosomal genes from short read sequencing data.
bowmanjeffs/paprica
paprica - PAthway PRediction by phylogenetIC plAcement
gmteunisse/fantaxtic
Fantaxtic - Nested Bar Plots for Phyloseq Data
MG-RAST/MG-RAST-Tools
Repository of script tools, examples, and contributed code for using the MG-RAST API
twbattaglia/btools
A set of R functions that help faciliate a lot of tedious processing
petzi53/bib2academic
Convert BibTex to Markdown for the Hugo Academic Theme
pierrepeterlongo/commet
Comparing and combining multiple metagenomic datasets
transcript/SAMSA
Programs and documentation for the SAMSA pipeline, version 1.0
MetaSUB/CAP2
opisthokonta/tsnemicrobiota
t-distributed stochastic neighbor embedding for microbiota data
junbinzhao/FluxCalR
This R package is used to calculate CO2 and CH4 gas fluxes measured with static chamber method. It provide a easy way to calculate multiple flux measurements from one data file.
SchlossLab/Kozich_MiSeqSOP_AEM_2013
Reproducible analysis of sequence analysis on a MiSeq
Vasco-Varas/Bioload
Bioload takes your CD-HIT virome protein clustering results and generates a tab-delimited table linking proteins in your dataset with Tara virome protein clusters (TOV) and their metadata. Bioload can help you classify your own proteins into Tara Ocean Virome protein clusters as in Brum et al. 2015.
mjmiossec/omniscope
Finding additional species in reference-based assembly data using sequence homology, read depth and directed de novo assembly.