edgraham/BinSanity

Issues

• Paired-end reads stored in a single-end read library

  #58 opened 3 years ago by dzolier
  1

• Error with coverage file

  #62 opened 2 years ago by winanonanona
  0

• Alignment record is too long.

  #61 opened 2 years ago by hannah-doris
  0

• Test works but binsanity-profile fails

  #59 opened 3 years ago by biotemon
  2

• Binsanity doesn't produce final bins

  #60 opened 3 years ago by esraagithub
  0

• Does Binsanity_lc continue from checkpoints?

  #31 opened 5 years ago by jvollme
  6

• The program failed to read in your coverage file

  #54 opened 4 years ago by Geize
  7

• Index out of range error while running Binsanity-wf

  #57 opened 4 years ago by Metagymomics
  2

• Bio.Alphabet removed from Biopython

  #51 opened 4 years ago by alxsimon
  9

• Bio.Alphabet has been removed from Biopython error in Binsanity-refine

  #56 opened 4 years ago by jolespin
  0

• [Feature Request] Binsanity-profile to accept gzipped fasta and stdin

  #55 opened 4 years ago by jolespin
  1

• Error during Affinity Propagation stage with Binsanity-lc

  #53 opened 4 years ago by michaelwoodworth
  1

• error with "concat"

  #52 opened 4 years ago by CLGLynnsane
  1

• MemoryError: Unable to allocate 192. GiB for an array with shape (160646, 160646) and data type float64

  #48 opened 5 years ago by mutantjoo0
  5

• utils scripts :: TabError: inconsistent use of tabs and spaces in indentation

  #50 opened 5 years ago by EricDeveaud
  1

• tag release on github accordingly to pypi

  #49 opened 5 years ago by EricDeveaud
  1

• Error during BinSanity execution prevent correct outputs from beign created

  #45 opened 5 years ago by apcamargo
  3

• Issue with low_completion.fna and 4mer

  #46 opened 5 years ago by michoug
  1

• Binsanity-profile unable to write .cov file

  #43 opened 5 years ago by slambrechts
  3

• Empty List from Binsanity-profile

  #41 opened 5 years ago by mbcouger
  3

• Release source code in PyPI

  #44 opened 5 years ago by apcamargo
  2

• Final Bins Output

  #38 opened 5 years ago by cazzlewazzle89
  1

• Binsanity-profile truncates the name of the alignment file

  #37 opened 5 years ago by jolespin
  1

• Using BinSanity for metagenomes with bacteria, archaea, and protists

  #36 opened 5 years ago by jolespin
  1

• [Question] Why does BinSanity-profile require fasta file and contig ids?

  #35 opened 5 years ago by jolespin
  1

• Binsanity-lc's TabError

  #42 opened 5 years ago by iquasere
  1

• BinSanity docker run-error in "_continuous_distns.py"

  #40 opened 5 years ago by Jigyasa3
  1

• Is it possible to use coverages from other sources ?

  #33 opened 6 years ago by michoug
  2

• IndexError: list index out of range

  #23 opened 7 years ago by MonicaSteffi
  9

• Binsanity-lc: TypeError: unhashable type: 'numpy.ndarray'

  #26 opened 6 years ago by acaciazhao
  3

• No log outputted.

  #28 opened 6 years ago by kodragonP
  1

• Output dir not used in Binsanity-profile

  #27 opened 6 years ago by openpaul
  1

• Error in Binsanity-lc.cov_array() - 'list' object has no attribute 'shape'

  #30 opened 6 years ago by prehensilecode
  4

• Error in CheckM stage

  #29 opened 6 years ago by prehensilecode
  2

• Thoughts on using binsanity on data sets that have been MDA'd

  #24 opened 6 years ago by JackieGOO
  1

• Test produces no bins

  #25 opened 7 years ago by sturne29
  7

• cov_array Error: 'list' object has no attribute 'shape'

  #20 opened 7 years ago by palomo11
  4

• problem with profile "OSError: [Errno 2] No such file or directory"

  #19 opened 7 years ago by camillaln
  7

• tests?

  #18 opened 7 years ago by wwood
  1

• Error in Testing the sample Data

  #22 opened 7 years ago by MonicaSteffi
  0

• please provide release tag

  #17 opened 7 years ago by EricDeveaud
  3

• BinSanity is only at v0.2.5.10 on PyPI

  #16 opened 7 years ago by donovan-h-parks
  1

• binsanity-checkm created in current working directory

  #15 opened 7 years ago by donovan-h-parks
  2

• Segmentation fault

  #14 opened 8 years ago by TanyaDvorkina
  6

• Binsanity-wf fails

  #13 opened 8 years ago by donovan-h-parks
  4

• low_completion.fna errors

  #11 opened 8 years ago by seanmcallister
  2

• I/O Error with shutil.py

  #10 opened 8 years ago by seanmcallister
  2

• I tried with carol's dataset and meren.cov but got errors.

  #6 opened 8 years ago by liuxianghui
  5

• Binsanity-profile speed

  #8 opened 8 years ago by rprops
  6

• Problem with cov-combine

  #1 opened 8 years ago by irazoquimatias
  1