eead-csic-compbio
These are the repositories of the Computational & Structural Biology group at EEAD-CSIC. See also @brunocontrerasmoreira
CSICZaragoza, Spain
eead-csic-compbio's Stars
meta-llama/llama
Inference code for Llama models
rust-bio/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
peremartra/Large-Language-Model-Notebooks-Course
Practical course about Large Language Models.
martinpacesa/BindCraft
User friendly and accurate binder design pipeline
oushujun/EDTA
Extensive de-novo TE Annotator
StrawberryPerl/Perl-Dist-Strawberry
Tooling to build and package releases for Perl on Windows.
huangnengCSU/compleasm
A genome completeness evaluation tool based on miniprot
circulosmeos/gztool
extract random-positioned data from gzip files with no penalty, including gzip tailing like with 'tail -f' !
freeseek/score
Tools to work with GWAS-VCF summary statistics files
rcedgar/usearch12
Open-source usearch
marschall-lab/panacus
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
niemasd/TreeCluster
Efficient phylogenetic clustering of viral sequences
zeeev/smartie-sv
calling SVs from Blasr contig level alignments
mol-evol/panGPT
A Generative Pre-Trained Transformer Package for Pangenomes
at-cg/PanAligner
Long read aligner for cyclic and acyclic pangenome graphs
wjian8/psvcp_v1.01
Pan-genome Construction and Population Structure Variation Calling pipeline
molstar/molrender
Create macromolecular images
heche-psb/wgd
wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
donovan-h-parks/PhyloRank
Assign taxonomic ranks based on evolutionary divergence.
maize-genetics/phg_v2
Practical Haplotype Graph (PHG) version 2
DessimozLab/matreex
chasewnelson/EBT
Evolutionary Bioinformatics Toolkit (EBT)
Cantalapiedra/msa_conservation_index
Per-position conservation index of multiple sequence alignment
SunStarSys/orion
SunStar Systems' Orion Enterprise Wiki SSG
grady/kdetrees
R package for identifying discordant phylogenetic trees in a sample
najlaksouri/GWAS-Workflow
lucian-ilie/Seq-InSite
Seq-InSite: sequence supersedes structure for protein interaction site prediction
thebustalab/phylochemical_mapping
carmenmiravete/barley_variant_calling
Repository practice project in EEAD-CSIC
felipecobos/PeachGCN