El-Kebir Group

Department of Computer Science, University of Illinois at Urbana-Champaign

Pinned Repositories

CloMu
CloMu is a neural network based software for cancer phylogeny analysis.
Language:Python5 2 01
ClonArch
Examining the Spatial Clonal Architecture of Tumors
Language:Jupyter Notebook3 1 12
cnaviz
Language:Jupyter Notebook11 0 55
CORSID
TRS and gene identifier
Language:Python4 1 11
derna
RNA sequence design for a target protein sequence
Language:C7 2 42
doubletD
Language:Python4 2 54
mach2-viz
Cancer Metastasis and Clonal History (2) visualizer and exploratory tool
Language:JavaScript4 2 01
PhySigs
Phylogenetic inference of exposures of mutational signatures
Language:Jupyter Notebook41
RECAP
Detecting Evolutionary Patterns of Cancers using Consensus Trees
Language:Jupyter Notebook3 1 12
SPhyR
Single-cell Phylogeny Reconstruction
Language:Brainfuck8 1 33

El-Kebir Group's Repositories

elkebir-group/cnaviz
Language:Jupyter Notebook11 0 55
elkebir-group/SPhyR
Single-cell Phylogeny Reconstruction
Language:Brainfuck8 1 33
elkebir-group/derna
RNA sequence design for a target protein sequence
Language:C7 2 42
elkebir-group/CloMu
CloMu is a neural network based software for cancer phylogeny analysis.
Language:Python5 2 01
elkebir-group/CORSID
TRS and gene identifier
Language:Python4 1 11
elkebir-group/mach2-viz
Cancer Metastasis and Clonal History (2) visualizer and exploratory tool
Language:JavaScript4 2 01
elkebir-group/RECAP
Detecting Evolutionary Patterns of Cancers using Consensus Trees
Language:Jupyter Notebook3 1 12
elkebir-group/clonesim
Simulating clonal trees with segmental CNAs and SNVs
Language:C++2 0 0
elkebir-group/MACH2
Language:Jupyter Notebook2 1 0
elkebir-group/phertilizer
Phertilizer: growing a clonal tree from ultra-low coverage single-cell DNA sequencing data of tumors
Language:Python2 1 1
elkebir-group/phertilizer_data
The accompanying data repository for Phertilizer
2 1 0
elkebir-group/phyolin
Language:C++2 2 01
elkebir-group/cloneviz
Language:JavaScript1 1 0
elkebir-group/cnaviz-paper
Language:BlitzBasic1 0 0
elkebir-group/CNRein
Single-Cell Copy Number Calling with Evolution-Aware Deep Reinforcement Learning
Language:Python11
elkebir-group/paction
Language:C++1 1 0
elkebir-group/TRIBAL
Language:C1 1 0
elkebir-group/CORSID-viz
Language:Vue0 0 20
elkebir-group/Jumper
Discontinuous Transcript Assembly in Nidovirales
Language:Python0 1 11
elkebir-group/bcr-phylo-iso-benchmark
updating simulation and pipeline to
Language:Jupyter Notebook0 0
elkebir-group/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
elkebir-group/CORSID-container
CORSID containers
Language:Shell0 0
elkebir-group/CORSID-data
Language:HTML0 0
elkebir-group/CORSID-docker
Docker container for CORSID
Language:Dockerfile1 01
elkebir-group/doubletD_data
2 0
elkebir-group/mach2-docs
Documentation for MACH2
0 0
elkebir-group/machina
Framework for Metastatic And Clonal History INtegrative Analysis
Language:Jupyter Notebook0 0
elkebir-group/PCCH
Language:Python0 0
elkebir-group/Sapling
Language:Python1 0
elkebir-group/UniPPM
Almost Uniform Sampling of Cancer Phylogenies from Bulk DNA Sequencing Data
Language:C++2 0