flyark

flyark's Stars

• evanpeikon/functional_enrichment_analysis

  A DIY guide to gene ontology, pathway, and gene set enrichment analysis

  Language:Jupyter Notebook144

• nglviewer/nglview

  Jupyter widget to interactively view molecular structures and trajectories

  Language:Jupyter Notebook812133

• samsledje/D-SCRIPT

  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

  Language:Jupyter Notebook8317

• ccsb-scripps/AutoDock-Vina

  AutoDock Vina

  Language:C++588208

• karpathy/LLM101n

  LLM101n: Let's build a Storyteller

  28.3k1.5k

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python92073

• aqlaboratory/genie2

  Protein structure diffusion model for unconditional protein generation and motif scaffolding

  Language:Python10915

• BioComputingUP/AlphaFold-disorder

  Predict disorder and disorder binding from AlphaFold structures

  Language:Python144

• PDBeurope/pdb-images

  Generates images from mmCIF/BCIF files

  Language:TypeScript324

• ml-explore/mlx

  MLX: An array framework for Apple silicon

  Language:C++16.4k940

• fteufel/alphafold-peptide-receptors

  Identifying peptide-receptor interactions using AlphaFold-Multimer

  Language:Jupyter Notebook186

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C772100

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python606110

• rcedgar/muscle

  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

  Language:C++19022

• YoshitakaMo/localcolabfold

  ColabFold on your local PC

  Language:Python556129

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.1k617

• patrickbryant1/EvoBind

  In silico directed evolution of peptide binders with AlphaFold

  Language:Jupyter Notebook8316

• RBVI/ChimeraX

  Source code for molecular graphics program UCSF ChimeraX

  Language:Python14727

• sokrypton/ColabDesign

  Making Protein Design accessible to all via Google Colab!

  Language:Python551128