fuxuliu

fuxuliu's Stars

• xai-org/grok-1

  Grok open release

  Language:Python49.6k5742108.3k

• Stability-AI/generative-models

  Generative Models by Stability AI

  Language:Python24.7k2583112.7k

• karpathy/nn-zero-to-hero

  Neural Networks: Zero to Hero

  Language:Jupyter Notebook11.9k287331.5k

• netease-youdao/QAnything

  Question and Answer based on Anything.

  Language:Python11.9k1044321.2k

• FlagOpen/FlagEmbedding

  Retrieval and Retrieval-augmented LLMs

  Language:Python7.7k471.1k557

• InternLM/xtuner

  An efficient, flexible and full-featured toolkit for fine-tuning LLM (InternLM2, Llama3, Phi3, Qwen, Mistral, ...)

  Language:Python4k34536312

• PKU-YuanGroup/MoE-LLaVA

  Mixture-of-Experts for Large Vision-Language Models

  Language:Python2k2492129

• NUS-HPC-AI-Lab/OpenDiT

  OpenDiT: An Easy, Fast and Memory-Efficient System for DiT Training and Inference

  Language:Python1.4k236093

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 from Google Deepmind in Pytorch

  Language:Python1.2k4755151

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook1.1k2054132

• ZhuiyiTechnology/simbert

  a bert for retrieval and generation

  Language:Python847835150

• criteo/autofaiss

  Automatically create Faiss knn indices with the most optimal similarity search parameters.

  Language:Python817187974

• kyegomez/AlphaFold3

  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

  Language:Python758266100

• generatebio/chroma

  A generative model for programmable protein design

  Language:Python69485491

• ur-whitelab/chemcrow-public

  Chemcrow

  Language:Python628182193

• csuhan/OneLLM

  [CVPR 2024] OneLLM: One Framework to Align All Modalities with Language

  Language:Python590112732

• microsoft/evodiff

  Generation of protein sequences and evolutionary alignments via discrete diffusion models

  Language:Python522153773

• bobby-he/simplified_transformers

  Language:Python2832424

• zrqiao/NeuralPLexer

  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

  Language:Jupyter Notebook26765071

• nrbennet/dl_binder_design

  Language:Python24877258

• Kohulan/DECIMER-Image_Transformer

  DECIMER: Deep Learning for Chemical Image Recognition using Efficient-Net V2 + Transformer

  Language:Python20975652

• OpenBioML/chemnlp

  ChemNLP project

  Language:Python148325146

• amq92/simple_slurm

  A simple Python wrapper for Slurm with flexibility in mind.

  Language:Python12132017

• QizhiPei/BioT5

  BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)

  Language:Python963135

• jproney/AF2Rank

  Language:Jupyter Notebook955812

• carbonsilicon-ai/CarsiDock

  Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training" proposed by CarbonSilicon AI.

  Language:Python708117

• patrickbryant1/AFProfile

  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile

  Language:Python643130

• HKUNLP/RSA

  Retrieved Sequence Augmentation for Protein Representation Learning

  Language:Python45002

• automl/RNAformer

  Scalable Deep Learning for RNA Secondary Structure Prediction

  Language:Python28739

• BioinfoMachineLearning/MULTICOM3

  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was developed by the Bioinformatics and Machine Learning Lab at the University of Missouri. It was blindly tested in CASP15 and ranked among the best server predictors in 2022. It improves AlphaFold's accuracy by 5-10%.

  Language:Python25438