Increase Test Coverage
david4096 opened this issue · 0 comments
david4096 commented
All of these files are under the minimum test coverage.
| ga4gh/server/cli/configtest.py | 40 | 0 | 0 | 40 | 0.00% |
| ga4gh/server/configtest.py | 24 | 0 | 0 | 24 | 0.00% |
| ga4gh/server/datamodel/obo_parser.py | 403 | 135 | 12 | 256 | 33.49% |
| ga4gh/server/auth/init.py | 108 | 70 | 7 | 31 | 64.81% |
| ga4gh/server/repo/rnaseq2ga.py | 170 | 112 | 16 | 42 | 65.88% |
| ga4gh/server/init.py | 6 | 4 | 0 | 2 | 66.66% |
| ga4gh/server/cli/server.py | 30 | 21 | 0 | 9 | 70.00% |
| ga4gh/server/network/init.py | 37 | 26 | 3 | 8 | 70.27% |
| ga4gh/server/datamodel/continuous.py | 202 | 143 | 13 | 46 | 70.79% |
| ga4gh/server/gff3.py | 142 | 108 | 7 | 27 | 76.05% |
| ga4gh/server/datamodel/genotype_phenotype.py | 313 | 239 | 18 | 56 | 76.35% |
Ignore configtest, which is itself a part of the test apparatus. I believe that rnaseq2ga will be rewritten, I don't think we should increase coverage there yet. But the network, continuous, gff3, and g2p code all should be able to come up over 85% pretty easily.
- ga4gh/server/auth/init.py over +20%
- ga4gh/server/init.py over +20%
- ga4gh/server/network/init.py +15%
- ga4gh/server/datamodel/continuous.py + 15%
- ga4gh/server/gff3.py + 10%
- ga4gh/server/datamodel/genotype_phenotype.py + 10%
Also, I found this really useful for making tables in markdown https://donatstudios.com/CsvToMarkdownTable https://github.com/donatj/CsvToMarkdownTablez