galaxyproject/galaxy-helm

Issues

• Cannot delete files/folders in the galaxy database owned by root users

  #478 opened 2 months ago by DuttaAnik
  13

• File permission problems with restricted NFS mounts

  #476 opened a month ago by ksuderman
  0

• Cannot Download output file from Galaxy

  #461 opened 3 months ago by DuttaAnik
  16

• tag-and-release job does not checkout latest commits

  #472 opened 3 months ago by ksuderman
  0

• Update galaxy-cvmfs-csi

  #471 opened 3 months ago by ksuderman
  0

• Release notes not generated

  #462 opened 3 months ago by ksuderman
  0

• Move the probedb.py script

  #467 opened 3 months ago by ksuderman
  5

• Maintenance job should also call maintenance.sh script and others

  #408 opened 3 months ago by pcm32
  3

• Committer identity unknown

  #465 opened 3 months ago by ksuderman
  0

• Error in Galaxy-helm installation

  #457 opened 5 months ago by DuttaAnik
  2

• Node selectors

  #456 opened 5 months ago by ksuderman
  0

• Releases are not being tagged

  #452 opened 5 months ago by ksuderman
  0

• Hardcoded job priorityClass prohibits scaling

  #450 opened 5 months ago by mapk-amazon
  5

• Default galaxy container fails to provide the environment for parse_parameter expression tool

  #447 opened 9 months ago by pcm32
  1

• Crashes without Refdata on CVMFS

  #439 opened a year ago by mapk-amazon
  1

• Occasional issues with sqlite tool cache

  #406 opened a year ago by pcm32
  40

• galaxy-cvmfscsi-nodeplugin daemonset uses wrong pvc name

  #434 opened a year ago by pckroon
  3

• Missing converters directory on jobs containers

  #425 opened a year ago by pcm32
  7

• Update CVMFS CSI

  #435 opened a year ago by ksuderman
  1

• CVMFS alien cache name mismatch

  #437 opened a year ago by ksuderman
  1

• INSTALLATION FAILED on debian11 due to unbound immediate PersistentVolumeClaims

  #433 opened a year ago by Milokita
  13

• On Helm upgrade, Galaxy default tools don't get updated from a new galaxy container

  #418 opened a year ago by pcm32
  4

• Requirements not installed before the start of web server

  #431 opened a year ago by mapk-amazon
  2

• S3FS driver: yandex -> ctrox

  #427 opened a year ago by yegortokmakov
  0

• Startup time for galaxy web container can take very long

  #391 opened 2 years ago by pcm32
  19

• Helm delete leaves some remanent behind

  #403 opened 2 years ago by pcm32
  5

• Database default space allowance gets filled fairly quickly

  #401 opened 2 years ago by pcm32
  7

• Run out of file locks after an hour of running (around ~100 jobs)

  #399 opened 2 years ago by pcm32
  8

• Job directories failed to be deleted for failed jobs

  #398 opened 2 years ago by pcm32
  8

• No space left on device even though NFS and nodes have disk space

  #393 opened 2 years ago by pcm32
  4

• Galaxy workflow handler seems to have issues in communicating with Rabbit/AMPQ

  #392 opened 2 years ago by pcm32
  3

• rabbitmq-server fails to start

  #390 opened 2 years ago by pcm32
  13

• Cannot deploy on on-premise k8s

  #386 opened 2 years ago by pckroon
  3

• Suggestion about galaxy/ingress.yaml

  #368 opened 2 years ago by mshaikh786
  1

• helm install is successful but getting an error on landing page

  #369 opened 2 years ago by mshaikh786
  2

• Update cert-manager

  #366 opened 2 years ago by ksuderman
  0

• Update NFS

  #365 opened 2 years ago by ksuderman
  0

• Galaxy with CVMFS seems to work on newer kubernetes

  #342 opened 3 years ago by cyrilcros
  4

• Broken link in the readme

  #357 opened 2 years ago by ksuderman
  3

• Increase ephemeral storage limit in values.yml

  #356 opened 2 years ago by ksuderman
  0

• Installs stalls during PG initialization

  #352 opened 2 years ago by 23skdu
  1

• Create a higher user id for galaxy than 101

  #334 opened 3 years ago by nuwang
  1

• Make galaxy-min issue autobuild

  #335 opened 3 years ago by nuwang
  0

• SVG files not being displayed in the new user Welcome page

  #330 opened 3 years ago by ksuderman
  4

• Demote init jobs to non-root and de-hardcode user 101

  #320 opened 3 years ago by almahmoud
  0

• Remote files functionality missing and upgrade leads to DB issues

  #299 opened 3 years ago by viktoriaas
  1

• Favicon and logo paths are not right

  #295 opened 3 years ago by viktoriaas
  1

• create_db.sh throws exception with a seperate postgresql install

  #304 opened 3 years ago by cyrilcros
  2

• galaxy init mount jobs never reach completion when run a second time with persistence enabled

  #303 opened 3 years ago by cyrilcros
  14

• Sudden DB version issues

  #296 opened 3 years ago by viktoriaas
  2