Pinned Repositories
omero.biobank
Biobank: large scale biomedical computation on OMERO
elasticluster
Create clusters of VMs on the cloud and configure them with Ansible.
bioblend
A Python library for interacting with the Galaxy API
bwa_mem_wrapper
Copy of http://toolshed.g2.bx.psu.edu/repos/yufei-luo/bwa_0_7_5, in order to be able to share useful additions to the community.
galaxy4training
Build in a snap a Galaxy environment, on Debian and Ubuntu systems, for shared and highly interactive training sessions.
presta
Presta handles sequencing data produced from a large scale NGS Core facility. It leverages a reliable distributed task queue to create a messages-driven automation system. Presta is focused on real-time operations, but supports scheduling as well.
solida
SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.
gmauro's Repositories
gmauro/bwa_mem_wrapper
Copy of http://toolshed.g2.bx.psu.edu/repos/yufei-luo/bwa_0_7_5, in order to be able to share useful additions to the community.
gmauro/ansible
Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applications— automate in a language that approaches plain English, using SSH, with no agents to install on remote systems.
gmauro/ansible-galaxy-datasets
Ansible role to import datasets into a Galaxy instance
gmauro/ansible-galaxy-extras
Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
gmauro/budget_monitor
my personal accounting software
gmauro/DataScienceSpecialization.github.io
http://DataScienceSpecialization.github.io
gmauro/galaxy-central
git mirror galaxy-central's mercurial repo
gmauro/galaxy-tools-bgisoap
Fork of gigascience/galaxy-tools-bgisoap, in order to be able to share useful additions to the community.
gmauro/galaxy-training
gmauro/galaxytools
:microscope::books: Galaxy Tool wrappers
gmauro/irodspython
Automatically exported from code.google.com/p/irodspython
gmauro/mojombo.github.io
Jekyll source for my personal blog.
gmauro/omero.biobank-docker
Docker setup for http://github.com/crs4/omero.biobank
gmauro/Orione-doc
Orione documentation
gmauro/oswitch
Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
gmauro/pages_test
Pages test
gmauro/playbooks
Ansible playbooks
gmauro/PUBS2015
gmauro/uniprot_downloader
This tool retrieves all protein sequences from UniProt Knowledgebase for each Taxa ID given.