Pinned Repositories
omero.biobank
Biobank: large scale biomedical computation on OMERO
elasticluster
Create clusters of VMs on the cloud and configure them with Ansible.
bioblend
A Python library for interacting with the Galaxy API
bwa_mem_wrapper
Copy of http://toolshed.g2.bx.psu.edu/repos/yufei-luo/bwa_0_7_5, in order to be able to share useful additions to the community.
galaxy4training
Build in a snap a Galaxy environment, on Debian and Ubuntu systems, for shared and highly interactive training sessions.
presta
Presta handles sequencing data produced from a large scale NGS Core facility. It leverages a reliable distributed task queue to create a messages-driven automation system. Presta is focused on real-time operations, but supports scheduling as well.
solida
SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.
gmauro's Repositories
gmauro/ansbile-covid-db
gmauro/ansible-galaxy
An Ansible role for managing a Galaxy (http://galaxyproject.org) server.
gmauro/ansible-gxadmin
gmauro/ansible-nginx
An Ansible role for managing an nginx server.
gmauro/ansible-proftpd
Ansible role for installing and configuring ProFTPD for Galaxy
gmauro/ansible-role-tusd
Ansible role for tus.io server (tusd)
gmauro/bioblend
A Python library for interacting with Galaxy and CloudMan APIs
gmauro/bioconda-recipes
Conda recipes for the bioconda channel.
gmauro/comoda
a bunch of useful functions and classes
gmauro/containers
gmauro/deNBI_cloud_terraform_2020
Tutorial on using Terraform, part of the 3rd de.NBI user meeting.
gmauro/deNBI_Cloud_User_Meeting_2021
4th de.NBI Cloud User Meeting 2021 - Terraform workshop material
gmauro/docker-galaxy-stable
:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
gmauro/dotfiles
My collection of Ansible playbooks and dotfiles to configure my own workstation (base system and app dotfiles/configurations)
gmauro/ena-cog-uk-wfs
gmauro/galaxy
Data intensive science for everyone.
gmauro/galaxy-hub
Galaxy Community Hub
gmauro/gat_eu_2022
gmauro/gcc2021-training
gmauro/gmauro.github.io
Personal website
gmauro/gxadmin
Handy command line utility for Galaxy administrators :rocket:
gmauro/hello
gmauro/infrastructure-playbook
Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
gmauro/omnia
gmauro/planemo
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
gmauro/pqtl-believe-interval
Working space for Believe Interval projects analysis
gmauro/pulsar
Distributed job execution application built for Galaxy
gmauro/somalogic_QC
gmauro/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
gmauro/training-material
A collection of Galaxy-related training material