grimbough
Data Management Coordinator at the European Molecular Biology Laboratory. @Bioconductor Core Team member.
Pinned Repositories
anaconda-download-stats
Process and host download statistics for Anaconda packages
bioc-actions
GitHub Actions for developing and maintaining Bioconductor packages
biomaRt
R package providing query functionality to BioMart instances like Ensembl
code.bioconductor.org
Tools for browsing the Bioconductor code repository
FITfileR
R package for reading data from FIT files using only native R code, rather than relying on external libraries.
msmbstyle
Tufte inspired bookdown template
Rarr
A simple native R reader for Zarr Arrays
rhdf5
Package providing an interface between HDF5 and R
rhdf5filters
Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.
Rhdf5lib
Distribution of the HDF5 library in an R package
grimbough's Repositories
grimbough/arrayQualityMetrics
grimbough/BBSRC_Reproducibility_RMarkdown
grimbough/AnnotationHub
Client for the Bioconductor AnnotationHub web resource
grimbough/basilisk
Python for Bioconductor
grimbough/benchmark-hdf5-clustering
Benchmarking project for scalable clustering algorithms with large observations and HDF5 files
grimbough/bioconda-recipes
Conda recipes for the bioconda channel.
grimbough/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
grimbough/BiocWorkflowTools
grimbough/book-build-workflow
grimbough/BraDiPluS
BraDiPluS (Braille Display Plugs Data Analysis) is an R package to process and analyse data produced using the microfluidic platform for functional drug screening of patient biopsies developed in collaboration with Merten group (EMBL).
grimbough/CoGAPS
Bayesian MCMC matrix factorization algorithm
grimbough/CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
grimbough/CumberlandLodge
program and scripts for Cumberland Lodge 2019
grimbough/DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
grimbough/EMBL_singularity
grimbough/evolution-on
evolution-tray plugin suitable for arch packaging and with useful patches
grimbough/ExperimentHub
Client to access ExperimentHub resources
grimbough/hdf5-blosc
Filter for HDF5 that uses Blosc
grimbough/InstallationScriptsCSAMA
grimbough/IRONMAN-Results
Download and process results tables from IRONMAN events
grimbough/mbkmeans
K-means clustering for large single-cell datasets
grimbough/mzR
This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
grimbough/OrchestratingSingleCellAnalysis
An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
grimbough/OSCABase
Single-cell-related content for the OSCA Book.
grimbough/rhdf5filters-benchmarks
Shiny app for displaying results of HDF5 compression filter benchmarking
grimbough/Rhtslib
HTSlib high-throughput sequencing library as an R package
grimbough/singularity-rstudio
RStudio Server in a Singularity container
grimbough/swc_hpc
grimbough/Testing-Singularity
grimbough/tufte
Tufte Styles for R Markdown Documents