Move plantseg to conda-forge
Closed this issue · 9 comments
Here's the conda-forge PR: conda-forge/staged-recipes#24713
@lorenzocerrone @qin-yu could you write in the comments of this PR that you agree to be a maintainer?
for some reason the tests fail for linux build:
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/napari/utils/colormaps/__init__.py", line 2, in <module>
from napari.utils.colormaps.colormap import Colormap
File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/_pytest/assertion/rewrite.py", line 186, in exec_module
exec(co, module.__dict__)
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/napari/utils/colormaps/colormap.py", line 7, in <module>
from napari.utils.color import ColorArray
File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/_pytest/assertion/rewrite.py", line 186, in exec_module
exec(co, module.__dict__)
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/napari/utils/color.py", line 7, in <module>
from napari.utils.colormaps.standardize_color import transform_color
File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/_pytest/assertion/rewrite.py", line 186, in exec_module
exec(co, module.__dict__)
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/napari/utils/colormaps/standardize_color.py", line 27, in <module>
from vispy.color import ColorArray, get_color_dict, get_color_names
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/color/__init__.py", line 12, in <module>
from .colormap import (Colormap, BaseColormap, # noqa
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/color/colormap.py", line 14, in <module>
import vispy.gloo
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/gloo/__init__.py", line 47, in <module>
from . import gl # noqa
^^^^^^^^^^^^^^^^
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/gloo/gl/__init__.py", line 230, in <module>
from . import es2 as default_backend # noqa
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/gloo/gl/es2.py", line 48, in <module>
raise OSError('GL ES 2.0 library not found')
I'll add pyqt explicitly to meta.yaml and see if it works
@constantinpape also run into this issue, when trying to release micro-sam (conda-forge/staged-recipes#23374). Looks like the workaround is to remove napari from the dependencies for now...
Hey Man, thanks for the PR. Have you tried to use this fix in the first comment? conda-forge/staged-recipes#23374 (comment)
PS: in the PR, should I just write that I will be a maintainer? or is there a specific command?
I agree to be a maintainer.
@lorenzocerrone I've added yum_requirements.txt for opengl, let's see if it works
@lorenzocerrone @qin-yu it's enough to say 'I agree to be maintainer/co-maintainer of this package' in the comment of the conda-forge PR conda-forge/staged-recipes#24713
@lorenzocerrone jtlyk, adding yum_requirements solved the issue with opengl. There is a problem with windows build Unsatisfiable dependencies for platform win-64: "pytorch". I'll try to add pytorch as optional dependency, since anyway it has to be installed separately with pytorch and nvidia channels.
kk, all checks have passed, so it's good to go. I've pinged the reviewers.
plant-seg is on conda-forge now! Here's the feedstock repo: https://github.com/conda-forge/plant-seg-feedstock we need to keep up to date with future releases. We should update the installation instructions to use the conda-forge channel now.