kreshuklab/plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
PythonMIT
Pinned issues
Issues
- 1
Add support for multi-channel network output
#140 opened - 2
Confocal Ovules ds2x and ds3x are the same
#138 opened - 5
Error during layer export
#136 opened - 1
- 0
Add corrected segmented mask to proofreading
#133 opened - 0
Use pmaps layer instead of image layer by default in Watershed, Clustering and Proofreading widgets
#131 opened - 3
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Fix striding issues during prediction
#128 opened - 6
Errors with PlantSeg implementation
#127 opened - 1
New napari GUI is awesome!
#125 opened - 1
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- 2
Problem running plant-seg on batch mode
#121 opened - 3
Launching plant-seg after installation
#120 opened - 3
Input_paths cannot be empty
#114 opened - 2
2D segmentation of root meristem
#113 opened - 11
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GASP doesn't work with nifty 1.2.1
#107 opened - 3
- 2
files not visible in mac docker
#103 opened - 2
Error in using custom trained model
#102 opened - 2
no nifty=1.0.9 for Win64 as of Oct '21
#101 opened - 7
- 4
- 1
Required package on Lifted Multicut
#96 opened - 2
evaluation
#94 opened - 1
Docker container not working
#92 opened - 2
test_inputs not in .npy
#90 opened - 0
lmc from nuclei segmentation
#85 opened - 2
conda recipe problems
#83 opened - 0
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[Help] PNAS model questions
#74 opened - 3
crop_volume error in GUI Plantseg 1.3
#73 opened - 7
- 3
Installation instructions don't work
#69 opened - 0
- 3
Slices are skipped + ghost signal
#65 opened - 2
Is this OK for RTX 3060 ti?
#64 opened - 1
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- 5
LiftedMulticut error
#60 opened - 2
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