hesiyang395

hesiyang395's Stars

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.2k902

• gautamkrishnar/github-pages-gallery

  A zero dollar solution to host your photo/video gallery online using Github pages and GitHub Actions. No coding necessary.

  Language:CSS20965

• gpertea/gffread

  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

  Language:C++36239

• eggnogdb/eggnog-mapper

  Fast genome-wide functional annotation through orthology assignment

  Language:Python557105

• Ecogenomics/GTDBTk

  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  Language:Python46482

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k576

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k713

• pditommaso/awesome-pipeline

  A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

  6.1k625

• bioinform/neusomatic

  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

  Language:Python16751

• biopython/biopython

  Official git repository for Biopython (originally converted from CVS)

  Language:Python4.3k1.7k

• plotly/dash

  Data Apps & Dashboards for Python. No JavaScript Required.

  Language:Python21.2k2k

• Developer-Y/cs-video-courses

  List of Computer Science courses with video lectures.

  66.4k9.1k

• SushiLab/magpipe

  Language:R185

• voutcn/megahit

  Ultra-fast and memory-efficient (meta-)genome assembler

  Language:C++588134

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k332

• aria2/aria2

  aria2 is a lightweight multi-protocol & multi-source, cross platform download utility operated in command-line. It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink.

  Language:C++35.1k3.6k

• jmzeng1314/GEO

  Language:R768535

• bxlab/metaWRAP

  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

  Language:Shell389191

• argenos/zotero-mdnotes

  A Zotero plugin to export item metadata and notes as markdown files

  Language:JavaScript1.3k82

• MacPass/MacPass

  A native macOS KeePass client

  Language:Objective-C6.7k466

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.7k621

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.1k597

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.1k963

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.4k897

• FromEndWorld/LOFFER

  博客主题 A Jekyll theme with Chinese UI and document

  Language:SCSS375414

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.6k167

• blacksmithgu/obsidian-dataview

  A data index and query language over Markdown files, for https://obsidian.md/.

  Language:TypeScript6.8k405

• openbiox/weekly

  生信爱好者周刊（每周日发布）

  Language:HTML34825

• ziyewang/MetaBinner

  Language:Python456

• Keldos-Li/typora-latex-theme

  将Typora伪装成LaTeX的中文样式主题，本科生轻量级课程论文撰写的好帮手。This is a theme disguising Typora into Chinese LaTeX style.

  Language:SCSS4.7k304