houruiyan

houruiyan's Stars

• bytesfly/blog

  互联网是有记忆的，我想留下一些成长的脚印。

  Language:HTML2833

• boxiangliulab/AIDA_phase1_sQTL

  AIDA phase 1 splicing QTL paper

  Language:R1

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k497

• Hvass-Labs/TensorFlow-Tutorials

  TensorFlow Tutorials with YouTube Videos

  Language:Jupyter Notebook9.3k4.2k

• StatBiomed/sbms-server

  School of Biomedical Sciences (HKU) server wiki repository

  Language:Shell33

• maasha/biopieces

  Biopieces is a bioinformatic framework of tools easily used and easily created.

  Language:Perl14023

• tqdm/tqdm

  :zap: A Fast, Extensible Progress Bar for Python and CLI

  Language:Python27.9k1.3k

• lcmmichielsen/scXpresso

  Predicting cell population-specific gene expression levels

  Language:Jupyter Notebook31

• selenerkan/Expression-Prediction-from-DNA-Sequence

  Language:Python12

• CalabreseLab/seekr

  A library for counting small kmer frequencies in nucleotide sequences.

  Language:Python2313

• calico/basenji

  Sequential regulatory activity predictions with deep convolutional neural networks.

  Language:Python383120

• dohlee/spliceai-pytorch

  Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.

  Language:Jupyter Notebook113

• StatBiomed/CamoTSS

  Detection and couting alternative TSS in single cells

  Language:Jupyter Notebook83

• pytorch/serve

  Serve, optimize and scale PyTorch models in production

  Language:Java4k823

• pinellolab/pychromVAR

  A python package for chromVAR

  Language:Python222

• amirhossein-kz/Awesome-Diffusion-Models-in-Medical-Imaging

  Diffusion Models in Medical Imaging (Published in Medical Image Analysis Journal)

  1.3k121

• huangyh09/brie

  BRIE: Bayesian Regression for Isoform Estimate in Single Cells

  Language:Python4015

• single-cell-genetics/cellsnp-lite

  Efficient genotyping bi-allelic SNPs on single cells

  Language:C12411

• holab-hku/MTtrans

  Language:Jupyter Notebook82

• saketkc/gencode_regions

  Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

  Language:Jupyter Notebook9553

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C915286

• SZJShuffle/pySankey2

  Static Sankey diagrams with matplotlib

  Language:Jupyter Notebook3511

• StatBiomed/scRNA-efficiency-prediction

  Prediction of RNA splicing kinetics in scRNA-seq data

  Language:Python2

• mrdbourke/pytorch-deep-learning

  Materials for the Learn PyTorch for Deep Learning: Zero to Mastery course.

  Language:Jupyter Notebook9.3k2.8k

• kpatel427/YouTubeTutorials

  Language:R239112

• hussius/deeplearning-biology

  A list of deep learning implementations in biology

  2k473

• chung-lab/SCAFE

  Single Cell Analysis of Five'Ends

  Language:Perl4311

• huangyh09/brie-tutorials

  Tutorials for using BRIE

  Language:Jupyter Notebook7

• datawhalechina/pumpkin-book

  《机器学习》（西瓜书）公式详解

  23.5k4.7k

• single-cell-genetics/cellSNP

  Pileup biallelic SNPs from single-cell and bulk RNA-seq data

  Language:Python7111