huangnengCSU

huangnengCSU's Stars

• aymericdamien/TensorFlow-Examples

  TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)

  Language:Jupyter Notebook43.5k2k23614.9k

• ycm-core/YouCompleteMe

  A code-completion engine for Vim

  Language:Python25.5k5553.3k2.8k

• davidhalter/jedi-vim

  Using the jedi autocompletion library for VIM.

  Language:Python5.3k113792374

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.9k861.1k424

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.6k107309555

• jts/nanopolish

  Signal-level algorithms for MinION data

  Language:C++574361k159

• fritzsedlazeck/Sniffles

  Structural variation caller using third generation sequencing

  Language:Python5722749895

• Martinsos/edlib

  Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

  Language:C++52024181167

• batzner/indrnn

  TensorFlow implementation of Independently Recurrent Neural Networks

  Language:Python5153916129

• mummer4/mummer

  Mummer alignment tool

  Language:C++47721203109

• philres/ngmlr

  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

  Language:C++2942210040

• isovic/graphmap

  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

  Language:C++180279745

• ocxtal/minialign

  [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads

  Language:C12612139

• haotianteng/Chiron

  A basecaller for Oxford Nanopore Technologies' sequencers

  Language:Python121137853

• xiaochuanle/MECAT

  MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads

  Language:C++108126926

• lh3/minimap

  This repo is DEPRECATED. Please use minimap2, the successor of minimap.

  Language:C105181129

• nanoporetech/scrappie

  Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group

  Language:C92534127

• mbreese/swalign

  Smith-Waterman local aligner

  Language:Python6961322

• marcus1487/nanoraw

  Genome guided re-segmention and visualization for raw nanopore sequencing data.

  Language:Python4612598