insitro/redun

Issues

• Dryrun does not yield expected output

  #94 opened 3 months ago by aksarkar
  0

• postgresql database doesn't upgrade version when using Scheduler.

  #93 opened 3 months ago by njbernstein
  6

• Scheduler throws KeyError

  #91 opened 4 months ago by lucasavila00
  0

• Suggestion: Provide a suitable, default `namespace` for each task

  #90 opened 6 months ago by Andrew-S-Rosen
  0

• SLURM/HPC executor

  #25 opened 2 years ago by multimeric
  3

• Local docker problem when running conda example

  #89 opened 7 months ago by tiendu
  2

• Hashing a Task to include its dependencies

  #23 opened 2 years ago by elanmart
  2

• Docker executor cannot recognize the volumes option.

  #88 opened 8 months ago by danielecook
  0

• PostgreSQL Queue Executor (Distributed executor without Amazon/k8s)

  #78 opened a year ago by gabriel-v
  1

• How to isolate tasks in their own directory?

  #87 opened 9 months ago by Asutu
  0

• One-liner to run pytest and lint under Docker

  #85 opened 10 months ago by gabriel-v
  0

• ImportError: Package 'textual.widgets' has no class 'TextLog'

  #81 opened 10 months ago by gabriel-v
  1

• Configure docker executor volumes from redun.ini

  #77 opened 10 months ago by aksarkar
  2

• script() does not accept argument list, only works with valid UTF-8 string

  #80 opened a year ago by gabriel-v
  2

• File/Dir - cannot use path made of non-utf8 bytestrings

  #79 opened a year ago by gabriel-v
  0

• Google cloud

  #34 opened a year ago by jshleap
  6

• How to execute in local containers ?

  #75 opened a year ago by Melkaz
  1

• Scatter-merge operation in redun?

  #70 opened a year ago by PhilPalmer
  4

• [feature request] add option to pass environment variables for script task

  #67 opened a year ago by tandav
  3

• Job array causes error message on older versions of k8s

  #65 opened a year ago by dakoner
  0

• Overflow Error with Pickle Protocol 3

  #59 opened 2 years ago by TylerSpears
  2

• Please explain how to run redun server

  #58 opened 2 years ago by Melkaz
  1

• Database connection error after completing very long task

  #56 opened 2 years ago by spitz-dan-l
  0

• please document required setup for scheduling tasks from python code

  #53 opened 2 years ago by hamr
  2

• Use subprocess.run/check_output/… in examples

  #7 opened 2 years ago by flying-sheep
  1

• Code packaging for script tasks

  #48 opened 2 years ago by spitz-dan-l
  0

• Task-specific code packaging

  #46 opened 2 years ago by spitz-dan-l
  1

• Cleaning up Batch jobs on unexpected termination

  #27 opened 2 years ago by spitz-dan-l
  1

• Memory limits for local executor

  #42 opened 2 years ago by jshleap
  3

• Add Docker image as task option

  #39 opened 2 years ago by mstone-modulus
  9

• Scheduler becomes a bottleneck when tasks return large python objects

  #41 opened 2 years ago by spitz-dan-l
  0

• Docker executor: No such container

  #35 opened 2 years ago by ricomnl
  3

• Running redun pipelines locally with Docker

  #30 opened 2 years ago by ricomnl
  7

• redun does not execute any code for a simple example

  #31 opened 2 years ago by elanmart
  4

• Integrate genomics libraries in Spark support

  #26 opened 2 years ago by heuermh
  1

• For script tasks, `tempdir=True` with remote executor produces an error

  #20 opened 2 years ago by spitz-dan-l
  2

• Setting up the environment prior to task execution

  #18 opened 2 years ago by spitz-dan-l
  3

• Config option `db_aws_secret_name` only works if the secret is in `us-west-2`

  #17 opened 2 years ago by spitz-dan-l
  2

• Code packaging files in parent directories

  #16 opened 2 years ago by spitz-dan-l
  2

• Custom commandline argument parsing

  #15 opened 2 years ago by spitz-dan-l
  2

• SQLalchemy caching warning

  #14 opened 2 years ago by bbremer
  3

• Staging files

  #12 opened 3 years ago by lyin-vir
  2

• Improve Docker container building in examples

  #2 opened 3 years ago by mattrasmus
  0

• Nesting tasks with different executors: confusing results

  #10 opened 3 years ago by dakoner
  3

• Use pathlib.Path instead of strings for path

  #8 opened 3 years ago by flying-sheep
  0

• Can't stage out directory trees

  #9 opened 3 years ago by dakoner
  2

• [TypeError: Expressions of unknown length cannot be iterated] when trying to iterate on task output

  #6 opened 3 years ago by lyin-vir
  2