jasonsahl/LS-BSR

Issues

• Above species level?

  #32 opened 6 months ago by stianale
  1

• Fix the reference genome to compare

  #31 opened a year ago by shashibisht9
  2

• can i retrieve homologues from LS-BSR results or temp files?

  #27 opened 2 years ago by EmilianoMaresi
  1

• FileNotFoundError: Errno 2 No such file or directory: 'duplicate_ids.txt'

  #30 opened 3 years ago by yzhzu
  3

• Transpose a BSR matrix

  #29 opened 4 years ago by haruosuz
  2

• AssertionError: Tuples differ

  #28 opened 4 years ago by haruosuz
  1

• Is LS_BSR in conda or brew?

  #23 opened 4 years ago by tseemann
  2

• vsearch vs usearch

  #8 opened 9 years ago by brigidar
  12

• Error Installing LS_BSR

  #26 opened 6 years ago by Devyani06
  1

• Manual in Markdown format?

  #24 opened 7 years ago by tseemann
  2

• Fix all the markdown headings

  #22 opened 7 years ago by tseemann
  0

• LS-BSR pipeline query

  #20 opened 7 years ago by ReemaSingh
  4

• igs problem

  #19 opened 7 years ago by EricDeveaud
  1

• Error with test 3

  #21 opened 7 years ago by nana-marinbio
  9

• Visualization of output

  #15 opened 7 years ago by bluefish171
  1

• Bug: softlinks as input to -d can lead to problems

  #18 opened 7 years ago by bachev
  4

• Error: NameError: global name 'logging' is not defined

  #17 opened 7 years ago by bachev
  2

• igs missing? (Your environment is not set correctly. Please add LS-BSR to your PYTHONPATH and try again)

  #16 opened 7 years ago by bachev
  2

• shutil.copy may be better than os.link in line 111 in ls_bsr.py

  #9 opened 9 years ago by cvn001
  4

• ls-bsr > 1

  #13 opened 8 years ago by maesaar
  3

• error message "Clustering chosen, but no method selected...exiting"

  #12 opened 8 years ago by dutchscientist
  2

• BSR values >1

  #11 opened 8 years ago by ar0ch
  9

• Inconsistent interpretation of "processors" argument

  #10 opened 9 years ago by ar0ch
  1

• Use BLAST+ instead of BLAST ?

  #6 opened 10 years ago by tseemann
  6

• Consider free VSEARCH instead of USEARCH

  #7 opened 10 years ago by tseemann
  1

• Errors with select_seqs_by_IDs.py and filter_BSR_variome.py

  #5 opened 10 years ago by OJO2014
  9

• Problem with test_all_functions.py

  #4 opened 10 years ago by sinnamone
  7

• BSR matrix not as expected

  #3 opened 10 years ago by mgalardini
  6

• Your environment is not set correctly. Please add LS-BSR to your PYTHONPATH and try again

  #2 opened 10 years ago by sadieleob-zz
  7