jnoms

jnoms's Stars

• zedr/clean-code-python

  :bathtub: Clean Code concepts adapted for Python

  Language:Python4.4k16514781

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k893.3k632

• dvanoni/notero

  A Zotero plugin for syncing items and notes into Notion

  Language:TypeScript2.4k26254106

• bbuchfink/diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1.1k38701182

• ablab/spades

  SPAdes Genome Assembler

  Language:C++763321.2k138

• Edinburgh-Genome-Foundry/DnaFeaturesViewer

  :eye: Python library to plot DNA sequence features (e.g. from Genbank files)

  Language:Python601197492

• philres/ngmlr

  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

  Language:C++2932210040

• cmdcolin/oddgenes

  A small database of weird gene annotations

  Language:Raku19912111

• google-research/proteinfer

  Deep networks for protein functional inference

  Language:Jupyter Notebook16391527

• refresh-bio/FAMSA

  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

  Language:C++14983525

• pirovc/genome_updater

  Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

  Language:Shell14614315

• urmi-21/orfipy

  Fast and flexible ORF finder

  Language:Python625177

• comprna/RATTLE

  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

  Language:C++5795510

• hoelzer/poseidon

  PoSeiDon: positive selection detection and recombination analysis pipeline

  Language:C3561710

• rega-cev/virulign

  VIRULIGN: fast codon-correct alignment and annotation of viral genomes

  Language:C3152112

• jnoms/virID

  Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.

  Language:Python11303

• jnoms/SAT

  Structural Analysis Toolkit - A python package for manipulation of structural data and structural alignments.

  Language:Python5101

• jnoms/virORF_direct

  virORF_direct: Protein-level analysis of direct RNA sequencing data

  Language:Python3101

• jnoms/virKMER

  viral KMER enrichment - Used to enrich viral reads in an input dataset

  Language:Python2100

• jnoms/ESCC_microbiome

  Analysis and plotting scripts for the manuscript "An international report on bacterial communities in esophageal squamous cell carcinoma"

  Language:Jupyter Notebook1100

• jnoms/SV40_transcriptome

  Toolkit and pipeline for processing short- and long-read RNA sequencing data.

  Language:Jupyter Notebook1100