jonassibbesen

jonassibbesen's Stars

• catchorg/Catch2

  A modern, C++-native, test framework for unit-tests, TDD and BDD - using C++14, C++17 and later (C++11 support is in v2.x branch, and C++03 on the Catch1.x branch)

  Language:C++18.9k4411.9k3.1k

• microsoft/SPTAG

  A distributed approximate nearest neighborhood search (ANN) library which provides a high quality vector index build, search and distributed online serving toolkits for large scale vector search scenario.

  Language:C++4.9k137162580

• jarro2783/cxxopts

  Lightweight C++ command line option parser

  Language:C++4.3k59282591

• greg7mdp/parallel-hashmap

  A family of header-only, very fast and memory-friendly hashmap and btree containers.

  Language:C++2.6k66190250

• eigenteam/eigen-git-mirror

  THIS MIRROR IS DEPRECATED -- New url: https://gitlab.com/libeigen/eigen

  Language:C++1.8k1090548

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k472.1k195

• virtual-biohackathons/covid-19-bh20

  COVID-19 Biohackathon April 5-11 2020

  23858031

• bioinformatics-centre/BayesTyper

  A method for variant graph genotyping based on exact alignment of k-mers

  Language:C++876577

• vgteam/graph-genomics-review

  Pangenome graphs (review article on graph-based pangenomic methods)

  Language:TeX7114924

• NCBI-Hackathons/TheHumanPangenome

  A Strategy for Building and Using a Human Reference Pangenome

  Language:Jupyter Notebook7032324

• nicolaprezza/r-index

  An optimal space run-length Burrows-Wheeler transform full-text index

  Language:C++612316

• jltsiren/gbwt

  Substring index for paths in a graph

  Language:C++609313

• bioinformatics-centre/bayesembler

  A Bayesian method for doing transcriptome assembly from RNA-seq data

  Language:C++257175

• vgteam/libhandlegraph

  Library for the Handle Graph abstraction

  Language:C++2310276

• Center-for-Health-Data-Science/git-GitHub-workshop

  This repository is used for the HeaDS git and GitHub workshop 2023

  16504

• jmonlong/manu-vgsv

  Language:HTML99372

• vgteam/libvgio

  A dynamic library that provides io for the vg toolkit.

  Language:C++8797

• genevol-usp/hlaseqlib

  utility functions for the HLA RNAseq project

  Language:R4410

• rcurrie/kubernetes

  Various snippets and tooling to use a kubernetes cluster

  Language:Makefile4104

• adamnovak/kubeyard

  Shared FS and qsub environment for Kubernetes

  Language:Shell130

• OSSCB2013/coalescenator

  Software for population genetic inference from serially sampled genome sequencing data

  Language:C++1412