jsxlei/SCALEX

Issues

• datasets failed to download

  #23 opened a year ago by UnkownNames
  6

• Loss function of VAE

  #27 opened a year ago by blastlove
  1

• mouse_brain_atac datasets failed to download

  #25 opened a year ago by blastlove
  1

• Preprocessing of ATAC Data

  #26 opened a year ago by blastlove
  1

• Possible bug in preprocessing

  #24 opened a year ago by Beiusxzw
  0

• Paths are incorrectly handled

  #14 opened 2 years ago by scottgigante-immunai
  1

• can not repeat your tutorial "ntegrating scATAC-seq data using SCALEX"

  #17 opened 2 years ago by daweibushen
  3

• Intra-sample batches for large datasets

  #6 opened 2 years ago by parashardhapola
  1

• Uncorrect representation assignment?

  #13 opened 2 years ago by biosyssun
  2

• CITE-seq

  #3 opened 2 years ago by ebrombacher
  4

• Code to reproduce results?

  #2 opened 2 years ago by adamgayoso
  0

• np.warnings has been removed from newer version of numpy

  #21 opened 2 years ago by zhaleh-safikhani
  1

• Customize num_workers

  #20 opened 2 years ago by marx-alex
  1

• model.train() setting

  #18 opened 2 years ago by GlancerZ
  1

• SCALEX metrics help

  #16 opened 2 years ago by kostaslazaros
  8

• Projection onto new dataset requires shared latent space

  #15 opened 2 years ago by ryeking2010
  1

• Without X_umap in obsm of output adata

  #12 opened 2 years ago by houruiyan
  4

• indices in VAE.encodeBatch

  #9 opened 2 years ago by parashardhapola
  2

• Unused attribute n_domain in VAE

  #10 opened 2 years ago by parashardhapola
  2

• `outdir=None` throws errors

  #8 opened 2 years ago by scottgigante-immunai
  1

• TypeError: SCALEX() got an unexpected keyword argument 'test_list

  #11 opened 2 years ago by houruiyan
  3

• impute=True error

  #7 opened 2 years ago by scottgigante-immunai
  2