kkjtmac

kkjtmac's Stars

• wmjordan/PDFPatcher

  PDF补丁丁——PDF工具箱，可以编辑书签、剪裁旋转页面、解除限制、提取或合并文档，探查文档结构，提取图片、转成图片等等

  Language:C#9.2k961841.3k

• l0o0/jasminum

  A Zotero add-on to retrive CNKI meta data. 一个简单的Zotero 插件，用于识别中文元数据

  Language:TypeScript5.5k30289285

• dvanoni/notero

  A Zotero plugin for syncing items and notes into Notion

  Language:TypeScript2.4k26252103

• saeyslab/nichenetr

  NicheNet: predict active ligand-target links between interacting cells

  Language:R48314287117

• openbiox/weekly

  生信爱好者周刊（每周日发布）

  Language:HTML362132.5k26

• BayraktarLab/cell2location

  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  Language:Python317724358

• snap-stanford/GEARS

  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

  Language:Python20467841

• jianhuupenn/SpaGCN

  SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

  Language:Python19727859

• sunduanchen/Scissor

  Scissor package

  Language:C++18235831

• Easy-Shu/Beautiful-Visualization-with-R

  《R语言数据可视化之美》配套代码

  Language:PostScript1195087

• ZJUFanLab/bulk2space

  a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

  Language:Jupyter Notebook11342123

• carmonalab/scGate

  marker-based purification of cell types from single-cell RNA-seq datasets

  Language:R9152712

• slowkow/tftargets

  :dart: Human transcription factor target genes from 6 databases in convenient R format.

  Language:R8610419

• wjawaid/enrichR

  An R interface to enrichR

  Language:R7676417

• califano-lab/PISCES

  R package for Protein activity analysis of single-cell RNAseq.

  Language:R7572224

• Zaoqu-Liu/BioEnricher

  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer

  Language:HTML693107

• califano-lab/single-cell-pipeline

  Language:HTML408118

• grimmlab/BookChapter-RNA-Seq-Analyses

  Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis

  Language:Shell384111

• pat-s/rcli

  Simplified R version handling

  Language:Shell372241

• Su-informatics-lab/DSTG

  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence

  Language:Python3442010

• tsailabSJ/guideseq

  Analysis pipeline for the GUIDE-seq assay.

  Language:Python231012

• CostaLab/sc2marker

  Surface Marker Detection Using Single Cell Data

  Language:HTML8612

• BMILAB/stAPAminer

  Language:R7110

• bsml320/deCS

  Language:R6101

• yixianfan/CRDscore

  Language:R6113

• zhongguojie1998/CSOmap

  Reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly.

  Language:MATLAB6154

• atomadam2/Liver_Deconvolution

  These are the scripts used for my paper on liver deconvolution using single-cell RNA-seq data

  Language:R5120

• mepittman/ctf-apms

  Language:Jupyter Notebook210

• aawdeh/SigTFB

  Language:Python1100

• BushmanLab/cellTypeCompositions

  Language:R1401