labstructbioinf/pLM-BLAST

Issues

• Return results of pre-screening only

  #47 opened 4 months ago by staszekdh
  3

• Redundant alignment shift

  #30 opened a year ago by KYQiu21
  2

• Multi-GPU support in embeddings.py

  #27 opened a year ago by staszekdh
  3

• add cuda support for `plmblast.py`

  #36 opened a year ago by MiTRonGTE
  0

• Truncated alignments from self comparison

  #44 opened 7 months ago by staszekdh
  0

• question about filling scoring matrix

  #45 opened 6 months ago by Chiyasa
  3

• Re-implement graphical display of database search results

  #31 opened 7 months ago by staszekdh
  0

• Update pLM-BLAST on the MPI Toolkit

  #32 opened 7 months ago by staszekdh
  0

• kernel_size not adjusted automatically

  #42 opened 7 months ago by staszekdh
  0

• plmblast.py script doesn't work when following example

  #23 opened 9 months ago by seanrjohnson
  16

• Sequence names not in plmblast.py output

  #29 opened a year ago by seanrjohnson
  4

• Too large embedding files when using --asdir

  #28 opened a year ago by staszekdh
  2

• UnboundLocalError: local variable 'outfile' referenced before assignment

  #19 opened a year ago by Citugulia40
  9

• FEATURE REQUEST: faster and more robust database construction

  #13 opened a year ago by DaRinker
  3

• example scan of a small genome

  #18 opened a year ago by Argusmocny
  0

• allow `plmblast.py` to use directories as `query` argument

  #24 opened a year ago by Argusmocny
  0

• dbtofile.py doesn't work for databases created from fasta files

  #22 opened a year ago by seanrjohnson
  1

• ERROR in function filtering_db

  #20 opened a year ago by staszekdh
  0

• "Multi-query input not implemented"

  #10 opened a year ago by DaRinker
  15

• Errors on creating a target dataset and searching against it.

  #9 opened a year ago by maovshao
  6

• ERROR when using GPU: "ValueError('gpu is not available, but device is set to gpu and what now?')

  #12 opened a year ago by DaRinker
  1

• Error when making custom database "IndexError: list index out of range"

  #11 opened a year ago by DaRinker
  1

• Conflicting dependencies

  #2 opened 2 years ago by MiTRonGTE
  1

• missing package in conda env

  #1 opened 2 years ago by staszekdh
  1