Pinned Repositories
sdg
Sequence Distance Graph framework: graph + reads + mapping + analysis
w2rap-contigger
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
mikado
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
fa2tree
Generate a PHYLIP file from different sized fasta files, the markers must have the same starting position but the end is not important
gpuMFEM
Point Based deformable models implementation, single core, multi-core (OpenMP) and GPU (CUDA)
ondaCUDA
Finite differences wave propagation on the GPU
pynb
ljyanesm's Repositories
ljyanesm/process_sampler
Generic process sampler
ljyanesm/kmatch
simple aligner for very-high-id genomic sequences, based on kmer anchor lists
ljyanesm/KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
ljyanesm/w2rap-contigger
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
ljyanesm/foodbank
ljyanesm/pc_analysis
ljyanesm/kilombo
Kilobot simulator in C
ljyanesm/sacct_analyser
Jupyer notebook to analyse sacct data
ljyanesm/satsuma2
FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
ljyanesm/lmod_generator
Lmod .lua file generator script
ljyanesm/fa2tree
Generate a PHYLIP file from different sized fasta files, the markers must have the same starting position but the end is not important
ljyanesm/slurm-drmaa
SLURM drmaa library additions to accept native arguments for stdout and stderr redirection
ljyanesm/gpuMFEM
Point Based deformable models implementation, single core, multi-core (OpenMP) and GPU (CUDA)